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[177260_at]

Description Y48G8AR.D /REP_DB=WormBase Gene ID /WP=CE22202 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60706.1
Cluster 6grp_total > 33      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 3
(-3)
A 		48.1
(3)
A 		31.8
(0.8)
A 		44.9
(2.6)
A 		45
B 28.3
(3)
A 		4.1
(-2.9)
A 		3.7
(-3)
A 		20.3
(1)
A 		25
C 22.9
(-1.1)
A 		26.6
(-0.4)
A 		13.5
(-3)
A 		43.2
(3)
A 		30
avr 18.1
(-2.5) 		26.3
(0) 		16.3
(-3) 		36.1
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 60.8
(3)
A 		4.9
(-2.7)
A 		23.4
(-0.8)
A 		14.7
(-1.7)
A 		11.6
(-2.1)
A 		2.4
(-3)
A 		58
B 15.3
(-0.5)
A 		16.3
(-0.3)
A 		33.4
(3)
A 		5.1
(-2.4)
A 		5.7
(-2.3)
A 		2.1
(-3)
A 		31
C 4.6
(-2.1)
A 		1.9
(-3)
A 		20.6
(2.9)
A 		20.9
(3)
A 		2.8
(-2.7)
A 		5
(-2)
A 		19
avr 26.9
(3) 		7.7
(-1.9) 		25.8
(2.7) 		13.6
(-0.4) 		6.7
(-2.1) 		3.2
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.1
(-3)
A 		10.4
(3)
A 		8.3
(1.6)
A 		6.6
(0.5)
A 		9
B 9
(3)
A 		1
(-2.9)
A 		0.9
(-3)
A 		4.3
(-0.5)
A 		8
C 7.6
(3)
A 		7.6
(3)
A 		4.7
(-3)
A 		7.3
(2.4)
A 		3
avr 5.9
(1.6) 		6.3
(3) 		4.6
(-3) 		6.1
(2.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 11.2
(3)
A 		1.7
(-2.4)
A 		5.1
(-0.5)
A 		3.7
(-1.2)
A 		3.5
(-1.4)
A 		0.6
(-3)
A 		11
B 5.3
(0.7)
A 		5.4
(0.8)
A 		8.1
(3)
A 		1.4
(-2.5)
A 		2.3
(-1.8)
A 		0.8
(-3)
A 		7
C 1.7
(-1.6)
A 		0.6
(-3)
A 		5.2
(3)
A 		4.2
(1.7)
A 		0.9
(-2.6)
A 		1.7
(-1.6)
A 		5
avr 6.1
(3) 		2.6
(-1.1) 		6.1
(3) 		3.1
(-0.5) 		2.2
(-1.6) 		1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177260_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18637
Sequence Type Exemplar sequence
Representative Public ID Y48G8AR.D NCBI
Target Description Y48G8AR.D /REP_DB=WormBase Gene ID /WP=CE22202 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60706.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058438(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058438 NCBI Caenorhabditis elegans Y48G8AR.3 (Y48G8AR.3) mRNA, complete cds. 11/11 None
SNAP00000035863 ENSEMBL cdna:SNAP chromosome:CEL140:I:1285579:1287835:1 11/11 None
GENEFINDER00000035867 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1287305:1287835:1 11/11 None
Y48G8AR.3 ENSEMBL cdna:known chromosome:CEL140:I:1287305:1287835:1 gene:Y48G8AR.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1287304-1287835(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G8AR.3
Entrez Gene 190049 Entrez gene
SwissProt Q9N3N5 EMBL-EBI
WormBase CE22202 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60706 Hypothetical protein Y48G8AR.3 [Caenorhabditis elegans] ref|NP_490839.1| Y48G8AR.3 [Caenorhabditis elegans] 2.0E-59
Sequence
Target Sequence 
>C. ELEGANS:177260_AT
gaattccgccgtaaatgcagtcgatctgcaatgcgacacaaatcacaaaaacgccgtgcg
atgcccaaccaggacgtggaaaaagtcaacgaaattttcaaattcccgcggatttccgag
caagctctcatggatggaatccttaaaatttcgtgtatcgcttcttttaaaaacgggaat
caacgatgttttgagggctcaatttatgtgaaggagctgtgtggtttgaggaatggaaca
aaggttttcaaatttatcgaattggctaatattcgactgtacagtattgacgaggagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCCGCCGTAAATGCAGTCGAT 179 325 16 Antisense
GCAGTCGATCTGCAATGCGACACAA 29 313 32 Antisense
TCTGCAATGCGACACAAATCACAAA 266 609 40 Antisense
CACAAAAACGCCGTGCGATGCCCAA 447 193 59 Antisense
CGATGCCCAACCAGGACGTGGAAAA 105 1 74 Antisense
TCAAATTCCCGCGGATTTCCGAGCA 560 627 113 Antisense
GCGGATTTCCGAGCAAGCTCTCATG 202 291 123 Antisense
TAAAATTTCGTGTATCGCTTCTTTT 72 641 159 Antisense
TCAACGATGTTTTGAGGGCTCAATT 149 631 195 Antisense
GTGAAGGAGCTGTGTGGTTTGAGGA 494 479 223 Antisense
GACTGTACAGTATTGACGAGGAGGA 310 375 290 Antisense
Sequence Source Affymetrix Proprietary Database