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[177259_at]

Description M4.1 /REP_DB=WormBase Gene ID /WP=CE17187 /TR=Q9TYW9 /GB=AAC68994.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 6.8
(-2.5)
A 		17
(-1.2)
A 		2.9
(-3)
A 		50.1
(3)
A 		47
B 31.2
(3)
A 		5.8
(-3)
A 		19.2
(0.2)
A 		18.4
(-0)
A 		25
C 29.8
(-1.6)
A 		40.4
(0.3)
A 		22.1
(-3)
A 		55
(3)
A 		33
avr 22.6
(-1.2) 		21.1
(-1.6) 		14.7
(-3) 		41.2
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 19
(-0.6)
A 		40.5
(3)
A 		13
(-1.6)
A 		5.9
(-2.8)
A 		29.2
(1.1)
A 		4.8
(-3)
A 		36
B 5.7
(-2.6)
A 		45.1
(3)
A 		29
(0.7)
A 		2.9
(-3)
A 		21.3
(-0.4)
A 		36.7
(1.8)
A 		42
C 1.9
(-3)
A 		51.4
(3)
A 		5.6
(-2.6)
A 		36.4
(1.2)
A 		7
(-2.4)
A 		11
(-1.9)
A 		50
avr 8.9
(-3) 		45.7
(3) 		15.9
(-1.9) 		15.1
(-2) 		19.2
(-1.3) 		17.5
(-1.6) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.5
(-1.4)
A 		3.7
(-0.3)
A 		0.7
(-3)
A 		7.3
(3)
A 		7
B 9.9
(3)
A 		1.4
(-3)
A 		4.5
(-0.8)
A 		3.9
(-1.2)
A 		9
C 9.9
(0.4)
A 		11.6
(3)
A 		7.7
(-3)
A 		9.3
(-0.5)
A 		4
avr 7.4
(3) 		5.6
(-0.5) 		4.3
(-3) 		6.8
(1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.5
(-2)
A 		14.4
(3)
A 		2.8
(-2.3)
A 		1.5
(-2.9)
A 		8.8
(0.5)
A 		1.2
(-3)
A 		13
B 2
(-2.5)
A 		15
(3)
A 		7
(-0.4)
A 		0.8
(-3)
A 		8.6
(0.3)
A 		13.7
(2.5)
A 		14
C 0.7
(-3)
A 		15.7
(3)
A 		1.4
(-2.7)
A 		7.3
(-0.4)
A 		2.3
(-2.4)
A 		3.7
(-1.8)
A 		15
avr 2.1
(-3) 		15
(3) 		3.7
(-2.3) 		3.2
(-2.5) 		6.6
(-0.9) 		6.2
(-1.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177259_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10524
Sequence Type Exemplar sequence
Representative Public ID M4.1 NCBI
Target Description M4.1 /REP_DB=WormBase Gene ID /WP=CE17187 /TR=Q9TYW9 /GB=AAC68994.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028155 NCBI Caenorhabditis elegans M4.1 (M4.1) mRNA, complete cds. 11/11 None
M4.1 ENSEMBL cdna:known chromosome:CEL140:IV:3213768:3217664:1 gene:M4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035498 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3213773-3217268(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M4.1
Entrez Gene 187433 Entrez gene
SwissProt Q8ITW1 EMBL-EBI
WormBase CE33676 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGA.2800.1.S1_AT sarcolemma associated protein gga
MG-U74AV2:98553_AT sarcolemma associated protein mm
MG-U74BV2:110425_AT sarcolemma associated protein mm
MOE430A:1421215_A_AT sarcolemma associated protein mm
MOUSE430A_2:1421215_A_AT sarcolemma associated protein mm
MOUSE430_2:1421215_A_AT sarcolemma associated protein mm
MOE430A:1426457_AT sarcolemma associated protein mm
MOUSE430A_2:1426457_AT sarcolemma associated protein mm
MOUSE430_2:1426457_AT sarcolemma associated protein mm
MOE430A:1426458_AT sarcolemma associated protein mm
MOUSE430A_2:1426458_AT sarcolemma associated protein mm
MOUSE430_2:1426458_AT sarcolemma associated protein mm
MG-U74CV2:129441_AT Sarcolemma associated protein, mRNA (cDNA clone MGC:29389 IMAGE:5064534) mm
MU19KSUBA:TC21210_AT Sarcolemma associated protein, mRNA (cDNA clone MGC:29389 IMAGE:5064534) mm
MU19KSUBA:TC21210_G_AT Sarcolemma associated protein, mRNA (cDNA clone MGC:29389 IMAGE:5064534) mm
MU19KSUBC:TC40502_AT Sarcolemma associated protein, mRNA (cDNA clone MGC:29389 IMAGE:5064534) mm
RAE230A:1372489_AT Sarcolemma associated protein (predicted) rn
RAT230_2:1372489_AT Sarcolemma associated protein (predicted) rn
RG-U34C:RC_AI172498_AT Sarcolemma associated protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAN73857 Hypothetical protein M4.1 [Caenorhabditis elegans] ref|NP_001023326.1| M4.1 [Caenorhabditis elegans] 0.0
blast CAE59899 Hypothetical protein CBG03383 [Caenorhabditis briggsae] 1.0E-170
blast BAC85803.1 unnamed protein product [Homo sapiens] 3.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 7.2E-14
Sequence
Target Sequence 
>C. ELEGANS:177259_AT
agcacaattgtcaatcctatcctccaacaacaataatccggacaaacaaaaagaggaact
tctcaaaatgatcgacgaaaagacgaaattcgaggccaagacgaaggagatgatccgtcg
attgattgaggagaacggagagacgacatctcgcttgaaagacatggaaagatcactgga
gacgacggaacaaacgtatcaacagctccgatcacggaatgaggatctcgagacggcgtt
ggcggaaacgacagaaatgttcgatgcgaaggctgccgagttggagcaggccactgctga
tttgattgagaagcagaaggttgtgacgacttatgaggagaagctcaccgatttgcagca
gaagaatttgaagttgagcaagagttgtgtgataaacgagacggcttccggattgtcacg
cctgttggccaactcaattaacagtggaagcttcatcgatgagcccgaacttcatttgct
cattagtacgctgaaatcggcttcctatctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCACAATTGTCAATCCTATCCTCC 374 77 765 Antisense
AAACGTATCAACAGCTCCGATCACG 379 127 956 Antisense
GATCTCGAGACGGCGTTGGCGGAAA 664 415 988 Antisense
AGGCTGCCGAGTTGGAGCAGGCCAC 109 55 1034 Antisense
GCAGGCCACTGCTGATTTGATTGAG 386 311 1050 Antisense
GGAGAAGCTCACCGATTTGCAGCAG 590 519 1101 Antisense
AACGAGACGGCTTCCGGATTGTCAC 286 145 1159 Antisense
CACGCCTGTTGGCCAACTCAATTAA 241 199 1181 Antisense
GTGGAAGCTTCATCGATGAGCCCGA 368 489 1208 Antisense
GCCCGAACTTCATTTGCTCATTAGT 546 285 1227 Antisense
CGCTGAAATCGGCTTCCTATCTGCC 534 253 1253 Antisense
Sequence Source Affymetrix Proprietary Database