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[177257_at]

Description M162.2 /REP_DB=WormBase Gene ID /WP=CE18892 /TR=Q9XUC9 /GB=CAB05254.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 52      6grp_highest_nonorm > 53      6grp_total > 30      4grp_total > 34      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 21.9
(-3)
A 		89.3
(3)
A 		45.7
(-0.9)
A 		52.9
(-0.2)
A 		67
B 27
(-3)
A 		59.2
(2)
A 		65.7
(3)
A 		50.1
(0.6)
A 		39
C 49.4
(-1.8)
A 		72.3
(1.1)
A 		40.3
(-3)
A 		87
(3)
A 		47
avr 32.8
(-3) 		73.6
(3) 		50.6
(-0.4) 		63.3
(1.5) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1257
1 2 3 4 5 6 range
A 332.7
(-2.1)
P 		1233.8
(2.8)
P 		1240.8
(2.9)
P 		1264
(3)
P 		438.5
(-1.5)
P 		161.6
(-3)
P 		1102
B 332.9
(-2.2)
P 		970.7
(0.9)
P 		1418.1
(3)
P 		1030.1
(1.1)
P 		548.7
(-1.2)
P 		168.6
(-3)
P 		1250
C 402.9
(-1.6)
P 		918.4
(1.9)
P 		1078.1
(3)
P 		864.2
(1.6)
P 		431.2
(-1.4)
P 		188.2
(-3)
P 		890
avr 356.2
(-2) 		1041
(1.9) 		1245.7
(3) 		1052.8
(1.9) 		472.8
(-1.3) 		172.8
(-3) 		1073
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8
(-2.8)
A 		19.4
(3)
A 		12
(-0.8)
A 		7.7
(-3)
A 		12
B 8.6
(-3)
A 		14.6
(2.5)
A 		15.2
(3)
A 		10.7
(-1.1)
A 		7
C 16.4
(-0.9)
A 		20.8
(3)
A 		14.1
(-3)
A 		14.7
(-2.5)
A 		7
avr 11
(-3) 		18.3
(3) 		13.8
(-0.7) 		11
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 399
1 2 3 4 5 6 range
A 61.3
(-2.7)
P 		438.8
(3)
P 		270.2
(0.5)
P 		320.6
(1.2)
P 		132.3
(-1.6)
P 		39.4
(-3)
P 		399
B 115.8
(-1.9)
P 		323.1
(2.5)
P 		344.3
(3)
P 		272.8
(1.5)
P 		222.9
(0.4)
P 		62.9
(-3)
P 		281
C 149.4
(-0.6)
P 		280.2
(3)
P 		274.4
(2.8)
P 		173.8
(0.1)
P 		139.5
(-0.9)
P 		63
(-3)
P 		217
avr 108.8
(-1.9) 		347.4
(3) 		296.3
(2) 		255.7
(1.1) 		164.9
(-0.7) 		55.1
(-3) 		292
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177257_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13045
Sequence Type Exemplar sequence
Representative Public ID M162.2 NCBI
Target Description M162.2 /REP_DB=WormBase Gene ID /WP=CE18892 /TR=Q9XUC9 /GB=CAB05254.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075435(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075435 NCBI Caenorhabditis elegans M162.2 (M162.2) mRNA, complete cds. 11/11 None
M162.2 ENSEMBL cdna:known chromosome:CEL140:V:19786702:19787279:1 gene:M162.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032750 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19786701-19787279(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M162.2
Entrez Gene 187486 Entrez gene
SwissProt Q9XUC9 EMBL-EBI
WormBase CE18892 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05254 Hypothetical protein M162.2 [Caenorhabditis elegans] ref|NP_507836.1| M162.2 [Caenorhabditis elegans] 2.0E-99
blast NP_001023474 Y46C8AL.9a [Caenorhabditis elegans] 1.0E-46
blast NP_001023475 Y46C8AL.9b [Caenorhabditis elegans] 1.0E-46
Sequence
Target Sequence 
>C. ELEGANS:177257_AT
tcccgaaacttcttttcttggcaatacttattccatcatcactaaccgattgtcctgaca
ttgatggccaaaccagggaaatcaaaggaatatgctataaatttgtgacttctctgatga
aatatgaagatgctcgtgattggtgtcatcatcataacccagctgggccttcatggctag
catatgtccctgatcaggaaacgagtaattttttggccgtctacgccggttcaatatttg
gtgaaggtttcaaacacttctggatagggctcaatcgggatcctatttctaaaaccttgt
cctgggataccggtctttcagtttcctataccaactttggaagtaacgttgcacaaaact
acttttctgaaaacatcactaatacaaagtggaatacactgggagatgatgaggtacata
actttgtgtgcagttataggccatctacagtacctgctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCGAAACTTCTTTTCTTGGCAAT 257 593 17 Antisense
GGCAATACTTATTCCATCATCACTA 274 535 36 Antisense
ATCATCACTAACCGATTGTCCTGAC 164 29 51 Antisense
TTGTCCTGACATTGATGGCCAAACC 35 701 66 Antisense
GGTGTCATCATCATAACCCAGCTGG 564 499 158 Antisense
CAGCTGGGCCTTCATGGCTAGCATA 204 199 176 Antisense
GGCTAGCATATGTCCCTGATCAGGA 679 537 191 Antisense
GCCGTCTACGCCGGTTCAATATTTG 377 279 232 Antisense
GGCTCAATCGGGATCCTATTTCTAA 315 539 284 Antisense
GGTCTTTCAGTTTCCTATACCAACT 204 503 328 Antisense
ATAGGCCATCTACAGTACCTGCTAC 563 21 452 Antisense
Sequence Source Affymetrix Proprietary Database