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[177252_s_at]

Description ZC15.1 /REP_DB=WormBase Gene ID /WP=CE16683 /TR=O18265 /GB=CAB07709.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 10.8
(-3)
A
19.5
(-1.8)
A
17.7
(-2.1)
A
55.6
(3)
A
45
B 73.5
(3)
A
13.7
(-2.7)
A
10.1
(-3)
A
11.6
(-2.9)
A
63
C 17.8
(-2.4)
A
21.8
(-1.9)
A
12.6
(-3)
A
61.6
(3)
A
49
avr 34
(1.2)
18.3
(-2)
13.5
(-3)
42.9
(3)
29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 56.5
(3)
A
25.6
(-0.5)
A
10
(-2.3)
A
4.2
(-3)
A
39.1
(1)
A
8.5
(-2.5)
A
52
B 12.4
(1.1)
A
15
(3)
A
11.1
(0.1)
A
7
(-3)
A
8.8
(-1.7)
A
7.6
(-2.6)
A
8
C 12.4
(-0.1)
A
9.5
(-1.9)
A
11.7
(-0.6)
A
11.6
(-0.6)
A
17.7
(3)
A
7.6
(-3)
A
10
avr 27.1
(3)
16.7
(-0.2)
10.9
(-2)
7.6
(-3)
21.9
(1.4)
7.9
(-2.9)
20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 3.9
(-3)
A
4.2
(-2.6)
A
4.6
(-2)
A
8.1
(3)
A
4
B 23.4
(3)
A
3.4
(-2.7)
A
2.3
(-3)
A
2.5
(-2.9)
A
21
C 5.9
(-1.5)
A
6.3
(-1.1)
A
4.4
(-3)
A
10.4
(3)
A
6
avr 11.1
(3)
4.6
(-2.3)
3.8
(-3)
7
(-0.4)
7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 10.4
(2.2)
A
9.1
(1.5)
A
2.2
(-2.4)
A
1.1
(-3)
A
11.8
(3)
A
2.1
(-2.4)
A
11
B 4.3
(1.6)
A
5
(3)
A
2.7
(-1.5)
A
1.9
(-3)
A
3.6
(0.3)
A
2.8
(-1.3)
A
3
C 4.6
(1.1)
A
2.9
(-1.9)
A
3
(-1.8)
A
2.3
(-3)
A
5.7
(3)
A
2.6
(-2.5)
A
3
avr 6.4
(2.3)
5.7
(1.5)
2.6
(-2.1)
1.8
(-3)
7
(3)
2.5
(-2.2)
5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177252_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12955
Sequence Type Exemplar sequence
Representative Public ID ZC15.1 NCBI
Target Description ZC15.1 /REP_DB=WormBase Gene ID /WP=CE16683 /TR=O18265 /GB=CAB07709.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075515(11), NM_078315(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_075515 NCBI Caenorhabditis elegans ZC15.1 (ZC15.1) mRNA, complete cds. 11/11 A 
NM_078315 NCBI Caenorhabditis elegans F41G4.4 (F41G4.4) mRNA, complete cds. 11/11 A 
SNAP00000015579 ENSEMBL cdna:SNAP chromosome:CEL140:V:20304154:20306970:1 11/11 None
GENEFINDER00000015581 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20304154:20306970:1 11/11 None
GENEFINDER00000036419 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16829998:16830581:-1 11/11 None
ZC15.1 ENSEMBL cdna:known chromosome:CEL140:V:20304154:20306970:1 gene:ZC15.1 11/11 A 
F41G4.4 ENSEMBL cdna:known chromosome:CEL140:X:16829998:16830580:-1 gene:F41G4.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20304153-20306970(+) 100.0 100.0
chrX:16828549-16832641(-) 96.19 96.19
Public Domain and Genome References
Gene Title

Ensembl ZC15.1
F41G4.4
Entrez Gene 185635 Entrez gene
191050 Entrez gene
SwissProt Q95YA7 EMBL-EBI
O18265 EMBL-EBI
WormBase CE34556 Wormbase
CE16683 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07709 Hypothetical protein ZC15.1 [Caenorhabditis elegans] ref|NP_507916.1| ZC15.1 [Caenorhabditis elegans] 0.0
blast AAK85485 Hypothetical protein F41G4.5 [Caenorhabditis elegans] ref|NP_510717.2| F41G4.5 [Caenorhabditis elegans] 0.0
blast AAK85484 Hypothetical protein F41G4.4 [Caenorhabditis elegans] ref|NP_510716.2| F41G4.4 [Caenorhabditis elegans] 3.0E-92
Sequence
Target Sequence
>C. ELEGANS:177252_S_AT
ctggccgctgccatgcaaaaggatacactggtgtttagagacggaacccgcgttcatgac
atcatcaagctcgaattcacgatcacgaaaaacccaccggctgccctcaaggcgtaccag
gcgcgaaatacctggatgcagcaacaactgacaggactgaaacccaaagacgtactcgta
ggcttcgaacctaacgacgtgaagcaatactatcgctttctcctggctgccacccactgg
ctctggaaagtcagaaagacaaaaatgatcgtgaacgtcatagcatccagctgcacacag
cagatcgcaattggaaacgcatccggccaccagatgtttatcccgaccttttcgctcttc
gtgagacgccgcagtgaggtc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
CTGGCCGCTGCCATGCAAAAGGATA 209 241 2020 Antisense
TAGAGACGGAACCCGCGTTCATGAC 449 651 2055 Antisense
GACATCATCAAGCTCGAATTCACGA 7 371 2077 Antisense
TCACGATCACGAAAAACCCACCGGC 92 301 2096 Antisense
AAGGCGTACCAGGCGCGAAATACCT 661 159 2128 Antisense
CTCGTAGGCTTCGAACCTAACGACG 256 95 2194 Antisense
AAGCAATACTATCGCTTTCTCCTGG 484 151 2221 Antisense
GCATCCAGCTGCACACAGCAGATCG 179 311 2302 Antisense
TCGCAATTGGAAACGCATCCGGCCA 64 601 2324 Antisense
TCCGGCCACCAGATGTTTATCCCGA 423 593 2341 Antisense
CTTCGTGAGACGCCGCAGTGAGGTC 207 219 2376 Antisense
Sequence Source Affymetrix Proprietary Database