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[177251_at]

Description ZC15.1 /REP_DB=WormBase Gene ID /WP=CE16683 /TR=O18265 /GB=CAB07709.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 55      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 33.8
(3)
A 		4.5
(-3)
A 		9.5
(-2)
A 		34
(3)
A 		30
B 74.4
(3)
A 		3.1
(-3)
A 		42.6
(0.3)
A 		3.9
(-2.9)
A 		71
C 36.6
(1.3)
A 		36.7
(1.3)
A 		40.5
(3)
A 		26.8
(-3)
A 		14
avr 48.3
(3) 		14.8
(-3) 		30.9
(-0.1) 		21.6
(-1.8) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 6.6
(1.2)
A 		5
(-0.6)
A 		2.9
(-3)
A 		3.6
(-2.2)
A 		8.2
(3)
A 		7.7
(2.4)
A 		5
B 15
(0.8)
A 		2.9
(-3)
A 		4.2
(-2.6)
A 		2.8
(-3)
A 		7.1
(-1.7)
A 		22.3
(3)
A 		20
C 3
(-2.7)
A 		6.6
(-1.5)
A 		20.7
(3)
A 		5.7
(-1.8)
A 		7.9
(-1.1)
A 		2.1
(-3)
A 		19
avr 8.2
(0.8) 		4.8
(-2.3) 		9.3
(1.7) 		4
(-3) 		7.7
(0.3) 		10.7
(3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 12.3
(3)
A 		1
(-3)
A 		2.5
(-2.2)
A 		5
(-0.9)
A 		11
B 23.7
(3)
A 		0.8
(-3)
A 		9.9
(-0.6)
A 		0.8
(-3)
A 		23
C 12.1
(1.8)
A 		10.6
(0.8)
A 		14.1
(3)
A 		4.5
(-3)
A 		10
avr 16
(3) 		4.1
(-2.7) 		8.8
(-0.4) 		3.4
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.2
(-1.1)
A 		1.8
(0.8)
A 		0.6
(-3)
A 		0.9
(-2.1)
A 		2.5
(3)
A 		1.9
(1.1)
A 		2
B 5.2
(0.6)
A 		1
(-2.8)
A 		1
(-2.8)
A 		0.7
(-3)
A 		2.9
(-1.3)
A 		8.3
(3)
A 		8
C 1.1
(-2.5)
A 		2
(-1.3)
A 		5.3
(3)
A 		1.2
(-2.3)
A 		2.5
(-0.7)
A 		0.7
(-3)
A 		5
avr 2.5
(0.6) 		1.6
(-1.4) 		2.3
(0.1) 		0.9
(-3) 		2.6
(0.8) 		3.6
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177251_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12955
Sequence Type Exemplar sequence
Representative Public ID ZC15.1 NCBI
Target Description ZC15.1 /REP_DB=WormBase Gene ID /WP=CE16683 /TR=O18265 /GB=CAB07709.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075515(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075515 NCBI Caenorhabditis elegans ZC15.1 (ZC15.1) mRNA, complete cds. 11/11 A 
SNAP00000015579 ENSEMBL cdna:SNAP chromosome:CEL140:V:20304154:20306970:1 11/11 None
GENEFINDER00000015581 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20304154:20306970:1 11/11 None
ZC15.1 ENSEMBL cdna:known chromosome:CEL140:V:20304154:20306970:1 gene:ZC15.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20304153-20306970(+) 100.0 100.0
chrX:16828549-16832641(-) 96.19 96.19
Public Domain and Genome References
Gene Title
Ensembl ZC15.1
Entrez Gene 191050 Entrez gene
SwissProt O18265 EMBL-EBI
WormBase CE16683 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07709 Hypothetical protein ZC15.1 [Caenorhabditis elegans] ref|NP_507916.1| ZC15.1 [Caenorhabditis elegans] 0.0
blast AAK85485 Hypothetical protein F41G4.5 [Caenorhabditis elegans] ref|NP_510717.2| F41G4.5 [Caenorhabditis elegans] 0.0
blast AAK85484 Hypothetical protein F41G4.4 [Caenorhabditis elegans] ref|NP_510716.2| F41G4.4 [Caenorhabditis elegans] 2.0E-62
Sequence
Target Sequence 
>C. ELEGANS:177251_AT
gccgcagtgaggtccttgactgggagagtttcggtagacgcaatcacaacctaccgaagt
taccacgtaacatacgagcatcaaaaacgcacttagctcatggaaaacacaaatttccac
tctcgtcagaccaatcacgattctacggacatacatctcatcatggattcctccataatc
caccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGCAGTGAGGTCCTTGACTGGGA 518 285 2387 Antisense
GACTGGGAGAGTTTCGGTAGACGCA 58 377 2404 Antisense
GTAGACGCAATCACAACCTACCGAA 21 457 2420 Antisense
TCACAACCTACCGAAGTTACCACGT 614 627 2430 Antisense
GTTACCACGTAACATACGAGCATCA 408 443 2445 Antisense
AACGCACTTAGCTCATGGAAAACAC 322 145 2472 Antisense
GAAAACACAAATTTCCACTCTCGTC 196 355 2489 Antisense
TCCACTCTCGTCAGACCAATCACGA 34 589 2502 Antisense
ACCAATCACGATTCTACGGACATAC 143 85 2516 Antisense
ATACATCTCATCATGGATTCCTCCA 498 23 2537 Antisense
TCATGGATTCCTCCATAATCCACCC 683 621 2547 Antisense
Sequence Source Affymetrix Proprietary Database