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[177242_at]

Description M162.4 /REP_DB=WormBase Gene ID /WP=CE26683 /TR=Q9XUC7 /GB=CAB05256.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 02      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 3.3
(-3)
A 		3.9
(-2.9)
A 		4.1
(-2.9)
A 		68.5
(3)
A 		65
B 17.7
(-1)
A 		5
(-2.8)
A 		3.2
(-3)
A 		47.8
(3)
A 		45
C 2.8
(-3)
A 		5.7
(-2.6)
A 		12.4
(-1.7)
A 		47.2
(3)
A 		44
avr 7.9
(-2.6) 		4.9
(-3) 		6.6
(-2.8) 		54.5
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 22.2
(3)
A 		2.7
(-2.9)
A 		21
(2.6)
A 		4.3
(-2.5)
A 		2.5
(-3)
A 		3.4
(-2.7)
A 		20
B 7.8
(-2.1)
A 		6.2
(-2.3)
A 		1.3
(-3)
A 		42.9
(3)
A 		2.5
(-2.8)
A 		5.5
(-2.4)
A 		42
C 2.1
(-2)
A 		6
(1.3)
A 		4.4
(-0.1)
A 		8.1
(3)
A 		0.9
(-3)
A 		4.3
(-0.2)
A 		7
avr 10.7
(0.2) 		5
(-1.9) 		8.9
(-0.5) 		18.4
(3) 		2
(-3) 		4.4
(-2.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.2
(-2.7)
A 		0.8
(-3)
A 		1.1
(-2.8)
A 		10
(3)
A 		9
B 5.6
(0.1)
A 		1.2
(-2.7)
A 		0.7
(-3)
A 		10.2
(3)
A 		10
C 0.9
(-3)
A 		1.6
(-2.4)
A 		4.3
(-0.1)
A 		8
(3)
A 		7
avr 2.6
(-2) 		1.2
(-3) 		2
(-2.4) 		9.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 4.1
(2.2)
A 		1
(-2.7)
A 		4.6
(3)
A 		1.1
(-2.5)
A 		0.8
(-3)
A 		0.8
(-3)
A 		4
B 2.7
(-1.7)
A 		2.1
(-2)
A 		0.3
(-3)
A 		11.4
(3)
A 		1
(-2.6)
A 		2
(-2.1)
A 		11
C 0.8
(-1)
A 		1.8
(3)
A 		1.1
(0.2)
A 		1.6
(2.2)
A 		0.3
(-3)
A 		1.4
(1.4)
A 		2
avr 2.5
(-0.3) 		1.6
(-1.7) 		2
(-1.1) 		4.7
(3) 		0.7
(-3) 		1.4
(-2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14758
Sequence Type Exemplar sequence
Representative Public ID M162.4 NCBI
Target Description M162.4 /REP_DB=WormBase Gene ID /WP=CE26683 /TR=Q9XUC7 /GB=CAB05256.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000032748 ENSEMBL cdna:SNAP chromosome:CEL140:V:19771732:19779362:1 11/11 None
GENEFINDER00000032756 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19778121:19785224:1 11/11 None
M162.4 ENSEMBL cdna:pseudogene chromosome:CEL140:V:19778121:19780312:1 gene:M162.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y57G11C.29 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19778120-19779362(+) 100.0 100.0
Public Domain and Genome References
Ensembl M162.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T23774 hypothetical protein M162.4 - Caenorhabditis elegans 1.0E-162
blast T23774 hypothetical protein M162.4 - Caenorhabditis elegans 1.0E-145
blast CAB05255 Hypothetical protein M162.3 [Caenorhabditis elegans] ref|NP_507834.1| Serpentine Receptor, class T family member (srt-45) [Caenorhabditis elegans] 1.0E-143
blast CAB05255 Hypothetical protein M162.3 [Caenorhabditis elegans] ref|NP_507834.1| Serpentine Receptor, class T family member (srt-45) [Caenorhabditis elegans] 1.0E-140
blast CAE68187 Hypothetical protein CBG13847 [Caenorhabditis briggsae] 1.0E-123
blast CAE68187 Hypothetical protein CBG13847 [Caenorhabditis briggsae] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 4.5E-75
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.9E-71
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 4.3E-41
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 4.3E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000032748 6 65-87,100-122,137-159,180-202,236-253,274-293
GENEFINDER00000032756 11 41-63,70-92,97-119,140-162,192-209,230-249,312-334,341-363,368-390,411-433,453-475
Sequence
Target Sequence 
>C. ELEGANS:177242_AT
acttgctgcagttgtctttttaccgggtctatgctgattatgggaaccgtgttctgcatg
tatccaacgtttacttatgtggctggaggaattgcattaaatacctggtgcatggcgtgt
gcagctaccatgtccctattttccaatcggataataagtattggcttcaggaagtatgca
gatgtaatcgagaagaaactcgcctatacttcaatcagttttgtacttttctatggattc
tacatctgttggttttcacctacaattgtgttcaattcagtatttatggcatggattcct
gatccattatctgaggaagtacccagtaaagaggcagctgcatacgaaaaccccattcat
gtgtggaataattgggtttttgtgacatgtatgctcattttattctctgtgtattttgca
atggtaaaacgtctggcaaagggacagaactcaaaggcttccagatcgattttcattcaa
tgctcaataatttgcttcttcaacaccggagctgctattgtctgcaatgctgtggcaatc
gtaaccccttccgattggattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGCTGCAGTTGTCTTTTTACCG 7 103 259 Antisense
TACCGGGTCTATGCTGATTATGGGA 337 649 279 Antisense
GCATGGCGTGTGCAGCTACCATGTC 580 309 368 Antisense
GATTCTACATCTGTTGGTTTTCACC 672 431 494 Antisense
GGTTTTCACCTACAATTGTGTTCAA 123 505 509 Antisense
AGAGGCAGCTGCATACGAAAACCCC 216 69 588 Antisense
GTATGCTCATTTTATTCTCTGTGTA 620 455 647 Antisense
TTCTTCAACACCGGAGCTGCTATTG 311 689 754 Antisense
GAGCTGCTATTGTCTGCAATGCTGT 509 387 767 Antisense
GCAATGCTGTGGCAATCGTAACCCC 465 321 782 Antisense
TCGTAACCCCTTCCGATTGGATTAT 332 603 797 Antisense
Sequence Source Affymetrix Proprietary Database