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[177241_at]

Description Y54E10BR.I /REP_DB=WormBase Gene ID /WP=CE22471 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59556.1
Cluster 4grp_high_8_8 > 29      6grp_total > 64      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 72.2
(-3)
P 		108.5
(2.6)
P 		80.2
(-1.8)
P 		110.9
(3)
P 		39
B 79.5
(-3)
P 		99.1
(3)
P 		88.3
(-0.3)
P 		86.4
(-0.9)
P 		20
C 89
(-3)
P 		93.4
(-0.5)
P 		95.8
(0.8)
P 		99.7
(3)
A 		11
avr 80.2
(-3) 		100.3
(3) 		88.1
(-0.6) 		99
(2.6) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 44.8
(-3)
P 		52.8
(-2)
P 		74.6
(0.7)
A 		61
(-1)
P 		66
(-0.4)
P 		93.5
(3)
P 		49
B 31.8
(-3)
A 		66
(2.6)
P 		52.7
(0.4)
A 		38.8
(-1.8)
A 		48.1
(-0.3)
P 		68.2
(3)
P 		36
C 87.8
(3)
P 		43.9
(-2.1)
A 		71.8
(1.1)
A 		87.6
(3)
A 		55
(-0.8)
A 		36.1
(-3)
A 		52
avr 54.8
(-2.7) 		54.2
(-3) 		66.4
(3) 		62.5
(1.1) 		56.4
(-1.9) 		65.9
(2.8) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 26.3
(3)
P 		23.5
(1.3)
P 		21
(-0.1)
P 		16.2
(-3)
P 		10
B 25.3
(3)
P 		24.5
(2.3)
P 		20.5
(-1.2)
P 		18.4
(-3)
P 		7
C 29.5
(1.6)
P 		26.8
(0.6)
P 		33.4
(3)
P 		16.8
(-3)
A 		17
avr 27
(3) 		24.9
(1.7) 		25
(1.8) 		17.1
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 8.3
(-3)
P 		18.8
(1.3)
P 		16.2
(0.3)
A 		15.5
(-0)
P 		19.9
(1.8)
P 		22.8
(3)
P 		15
B 11.1
(-2.7)
A 		22
(1.6)
P 		12.8
(-2)
A 		10.3
(-3)
A 		19.5
(0.7)
P 		25.4
(3)
P 		15
C 32.5
(3)
P 		13.4
(-2.6)
A 		18.3
(-1.2)
A 		17.6
(-1.4)
A 		17.8
(-1.3)
A 		12.1
(-3)
A 		20
avr 17.3
(0) 		18.1
(0.9) 		15.8
(-1.6) 		14.5
(-3) 		19.1
(1.9) 		20.1
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177241_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18687
Sequence Type Exemplar sequence
Representative Public ID Y54E10BR.I NCBI
Target Description Y54E10BR.I /REP_DB=WormBase Gene ID /WP=CE22471 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59556.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058693(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058693 NCBI Caenorhabditis elegans Y54E10BR.2 (Y54E10BR.2) mRNA, complete cds. 11/11 None
SNAP00000038972 ENSEMBL cdna:SNAP chromosome:CEL140:I:3033007:3033825:1 11/11 None
GENEFINDER00000038980 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3033007:3033825:1 11/11 None
Y54E10BR.2 ENSEMBL cdna:known chromosome:CEL140:I:3033007:3033825:1 gene:Y54E10BR.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3033006-3033825(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E10BR.2
Entrez Gene 171878 Entrez gene
SwissProt Q9N3C8 EMBL-EBI
WormBase CE22471 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248346_AT ADP-ribosylation factor, putative at
CANINE_2:CFA.17572.1.S1_AT similar to ADP-ribosylation factor related protein 1 cfa
CANINE_2:CFAAFFX.20200.1.S1_AT similar to ADP-ribosylation factor related protein 1 cfa
CANINE_2:CFAAFFX.20200.1.S1_S_AT similar to ADP-ribosylation factor related protein 1 cfa
DROSOPHILA_2:1632630_AT dm
DROSGENOME1:153905_AT dm
CHICKEN:GGA.2599.1.S1_AT ADP-ribosylation factor related protein 1 gga
HG-U133A:203174_S_AT ADP-ribosylation factor related protein 1 hs
HG-U133A_2:203174_S_AT ADP-ribosylation factor related protein 1 hs
HG-U133_PLUS_2:203174_S_AT ADP-ribosylation factor related protein 1 hs
HG-FOCUS:203174_S_AT ADP-ribosylation factor related protein 1 hs
HU35KSUBD:RC_AA215468_S_AT ADP-ribosylation factor related protein 1 hs
HU35KSUBD:RC_R42768_R_AT ADP-ribosylation factor related protein 1 hs
HUGENEFL:X91504_AT ADP-ribosylation factor related protein 1 hs
U133_X3P:G4507448_3P_A_AT ADP-ribosylation factor related protein 1 hs
U133_X3P:HS.307140.0.S1_3P_X_AT ADP-ribosylation factor related protein 1 hs
U133_X3P:HS.307140.0.S1_3P_AT ADP-ribosylation factor related protein 1 hs
HG-U133A_2:215984_S_AT ADP-ribosylation factor related protein 1 hs
HG-U133_PLUS_2:215984_S_AT ADP-ribosylation factor related protein 1 hs
HG-U133A:215984_S_AT ADP-ribosylation factor related protein 1 hs
HG-U95AV2:35765_AT ADP-ribosylation factor related protein 1 hs
HG-U95E:73327_R_AT ADP-ribosylation factor related protein 1 hs
MOE430A:1425507_AT ADP-ribosylation factor related protein 1 mm
MOUSE430A_2:1425507_AT ADP-ribosylation factor related protein 1 mm
MOUSE430_2:1425507_AT ADP-ribosylation factor related protein 1 mm
MU11KSUBB:MSA.6119.0_S_AT ADP-ribosylation factor related protein 1 mm
MG-U74AV2:101866_AT ADP-ribosylation factor related protein 1 mm
MG-U74BV2:114430_AT ADP-ribosylation factor related protein 1 mm
MOE430A:1451735_AT ADP-ribosylation factor related protein 1 mm
MOUSE430A_2:1451735_AT ADP-ribosylation factor related protein 1 mm
MOUSE430_2:1451735_AT ADP-ribosylation factor related protein 1 mm
MOE430A:1425508_S_AT ADP-ribosylation factor related protein 1 mm
MOUSE430A_2:1425508_S_AT ADP-ribosylation factor related protein 1 mm
MOUSE430_2:1425508_S_AT ADP-ribosylation factor related protein 1 mm
MOE430B:1434488_AT ADP-ribosylation factor related protein 1 mm
MOUSE430_2:1434488_AT ADP-ribosylation factor related protein 1 mm
MU19KSUBA:TC19152_S_AT ADP-ribosylation factor related protein 1 (Arfrp1), mRNA mm
MU19KSUBA:TC22258_AT ADP-ribosylation factor related protein 1 (Arfrp1), mRNA mm
MU19KSUBB:TC32351_AT ADP-ribosylation factor related protein 1 (Arfrp1), mRNA mm
MU19KSUBB:TC33712_I_AT ADP-ribosylation factor related protein 1 (Arfrp1), mRNA mm
RG-U34A:X78603_AT ADP-ribosylation factor related protein 1 rn
RAE230A:1370223_AT ADP-ribosylation factor related protein 1 rn
RAT230_2:1370223_AT ADP-ribosylation factor related protein 1 rn
YEAST_2:1772376_AT GTPase of the Ras superfamily required to recruit Arl1p to the Golgi; similar to ADP-ribosylation factor Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF59556 Hypothetical protein Y54E10BR.2 [Caenorhabditis elegans] ref|NP_491094.1| Y54E10BR.2 [Caenorhabditis elegans] 1.0E-106
blast CAE60567 Hypothetical protein CBG04196 [Caenorhabditis briggsae] 1.0E-103
blast XP_392858 PREDICTED: similar to ENSANGP00000020929 [Apis mellifera] 3.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 8.5E-29
Sequence
Target Sequence 
>C. ELEGANS:177241_AT
acactttcggcgggtatctgggagaaattcttcaagaaaaaagactattatgtggtgata
gtcggtctggataatgctggaaaaactacgtttctggagcaaacaaaatctcactttgta
aaggactacggggttctgaatccatcaaaaatcacggcgacagttggtttgaatactgga
aatgtcgagctcaacaacacatgtcttcatttctgggatctcggaggccaggagagttta
cgagaactctgggcgacatattacgacgatgcaaatgccatgatttttgttgtggacgca
acaaggagcgatctcttcccaatagtagcatctcagtttaaagaagtaatggccaacgaa
atagttcaaaatattccagttttagtagcggtgaataaaagtgaaatggaaggagccgcc
gctgccgctgaggtccgaatgctgctcgaagacgacaatcaccgctcggaccttgcagtt
cttccggtttcggcgctagaaggaacaaatatcgaaagatgtgttcactggatcgtccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACTTTCGGCGGGTATCTGGGAGA 165 107 19 Antisense
GATAGTCGGTCTGGATAATGCTGGA 606 425 75 Antisense
GACTACGGGGTTCTGAATCCATCAA 621 367 142 Antisense
AACACATGTCTTCATTTCTGGGATC 495 135 214 Antisense
GAACTCTGGGCGACATATTACGACG 657 347 262 Antisense
AGCGATCTCTTCCCAATAGTAGCAT 533 81 325 Antisense
AGTGAAATGGAAGGAGCCGCCGCTG 634 59 418 Antisense
CTGAGGTCCGAATGCTGCTCGAAGA 614 227 446 Antisense
TGCTCGAAGACGACAATCACCGCTC 114 581 461 Antisense
TTCTTCCGGTTTCGGCGCTAGAAGG 700 687 497 Antisense
AAGATGTGTTCACTGGATCGTCCGA 138 155 534 Antisense
Sequence Source Affymetrix Proprietary Database