[Home] | [Total List]

[177240_at]

Description M162.7 /REP_DB=WormBase Gene ID /WP=CE18897 /TR=Q9XUC6 /GB=CAB05258.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.3
(-1.1)
A 		7.1
(3)
A 		2.9
(-1.6)
A 		1.6
(-3)
A 		6
B 1.5
(-2.1)
A 		1.3
(-3)
A 		2.1
(0.7)
A 		2.6
(3)
A 		1
C 4.6
(-1.9)
A 		2.4
(-3)
A 		3.3
(-2.6)
A 		14.5
(3)
A 		12
avr 3.1
(-2.5) 		3.6
(-1.6) 		2.8
(-3) 		6.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.3
(2.5)
A 		1
(-3)
A 		1.7
(-1.8)
A 		2.3
(-0.8)
A 		4.5
(2.8)
A 		4.6
(3)
A 		4
B 2.6
(2.4)
A 		1.1
(-2.4)
A 		0.9
(-3)
A 		2.3
(1.4)
A 		2.8
(3)
A 		2.6
(2.4)
A 		2
C 2.7
(-0.9)
A 		2.8
(-0.7)
A 		4.2
(3)
A 		1.9
(-3)
A 		3.6
(1.4)
A 		3.4
(0.9)
A 		2
avr 3.2
(1.8) 		1.6
(-3) 		2.3
(-0.9) 		2.2
(-1.2) 		3.6
(3) 		3.5
(2.7) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.2
(1.6)
A 		1.5
(3)
A 		0.8
(-0.2)
A 		0.2
(-3)
A 		1
B 0.5
(1)
A 		0.3
(-3)
A 		0.5
(1)
A 		0.6
(3)
A 		0
C 1.5
(-0.3)
A 		0.7
(-3)
A 		1.2
(-1.3)
A 		2.5
(3)
A 		2
avr 1.1
(3) 		0.8
(-3) 		0.8
(-3) 		1.1
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.8
(-0.3)
A 		0.3
(-3)
A 		0.4
(-2.5)
A 		0.6
(-1.4)
A 		1.4
(3)
A 		1.1
(1.4)
A 		1
B 0.9
(1.7)
A 		0.4
(-1.7)
A 		0.2
(-3)
A 		0.6
(-0.3)
A 		1.1
(3)
A 		1
(2.3)
A 		1
C 1
(1.5)
A 		0.9
(0.8)
A 		1.1
(2.3)
A 		0.4
(-3)
A 		1.2
(3)
A 		1.1
(2.3)
A 		1
avr 0.9
(0.4) 		0.5
(-3) 		0.6
(-2.1) 		0.5
(-3) 		1.2
(3) 		1.1
(2.1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177240_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13261
Sequence Type Exemplar sequence
Representative Public ID M162.7 NCBI
Target Description M162.7 /REP_DB=WormBase Gene ID /WP=CE18897 /TR=Q9XUC6 /GB=CAB05258.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075437(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075437 NCBI Caenorhabditis elegans M162.7 (M162.7) mRNA, complete cds. 11/11 None
GENEFINDER00000032759 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19790682:19792980:-1 10/11 None
M162.7 ENSEMBL cdna:known chromosome:CEL140:V:19790682:19792945:-1 gene:M162.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19790681-19792945(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M162.7
Entrez Gene 187490 Entrez gene
SwissProt Q9XUC6 EMBL-EBI
WormBase CE18897 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05258 Hypothetical protein M162.7 [Caenorhabditis elegans] ref|NP_507838.1| M162.7 [Caenorhabditis elegans] 0.0
blast CAA16394 Hypothetical protein Y51A2B.6 [Caenorhabditis elegans] ref|NP_001024257.1| Y51A2B.6 [Caenorhabditis elegans] 0.0
blast CAA16394 Hypothetical protein Y51A2B.6 [Caenorhabditis elegans] ref|NP_001024257.1| Y51A2B.6 [Caenorhabditis elegans] 1.0E-139
blast CAC14393 Hypothetical protein Y116F11B.11 [Caenorhabditis elegans] ref|NP_507849.1| Y116F11B.11 [Caenorhabditis elegans] 1.0E-124
blast CAC14393 Hypothetical protein Y116F11B.11 [Caenorhabditis elegans] ref|NP_507849.1| Y116F11B.11 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.0E-14
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:177240_AT
agttgtttcagagttgttgcagaatatttcaaaagttaaagaagtttctgataaaatgaa
ggaaaattcaaacaacaagacacttgtgatgaatgctctggcgtttaaggaatcagcttc
aattaaaagtatcatttcttctgtacaaaatgtttatggtctgctagacttggaagcccc
gatcaatcagctgaaaaatgttaactctattgttctcgaggagattgacaaagctcaaga
tccagcaaagctccagtctcaatggggagatcacaaggctgatatggcatctctccaagc
taccatgacatcagctaaagcttttgtagccgagctcgaaggccgcagagctaaaacatt
gctggaatacgcggatccattgaagaatctgtcaaagattcctgatgtcaaaatgaatgc
aagtgagaaatccaaagtgattgaggagtttattaaacagaatagtgatagtgatttgat
agctgcaaaggagacactcgacaagattgctaccatggatcttcaattctcgagtgttca
gtatccagaagcttctttcaagactcttcaggacgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTGTTTCAGAGTTGTTGCAGAAT 255 65 1476 Antisense
GACACTTGTGATGAATGCTCTGGCG 383 367 1554 Antisense
GAATGCTCTGGCGTTTAAGGAATCA 295 331 1566 Antisense
CAAAATGTTTATGGTCTGCTAGACT 584 189 1621 Antisense
AAGCCCCGATCAATCAGCTGAAAAA 547 149 1649 Antisense
AAATGTTAACTCTATTGTTCTCGAG 381 119 1671 Antisense
AAGATCCAGCAAAGCTCCAGTCTCA 237 155 1712 Antisense
AGGCTGATATGGCATCTCTCCAAGC 49 55 1751 Antisense
CTCTCCAAGCTACCATGACATCAGC 234 231 1766 Antisense
GAGTGTTCAGTATCCAGAAGCTTCT 363 401 2007 Antisense
TCTTTCAAGACTCTTCAGGACGTGT 545 613 2029 Antisense
Sequence Source Affymetrix Proprietary Database