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[177238_at]

Description M57.1 /REP_DB=WormBase Gene ID /WP=CE19540 /TR=Q9TYX9 /GB=AAC68984.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 61      6grp_total > 70      4grp_total > 53      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 71.7
(3)
P 		66.9
(2.3)
P 		28.1
(-3)
A 		37.9
(-1.7)
A 		44
B 71.5
(2.9)
P 		72.4
(3)
A 		56.5
(1.5)
A 		8.1
(-3)
A 		64
C 82
(3)
P 		50
(-1.5)
A 		54.3
(-0.9)
P 		39.6
(-3)
A 		42
avr 75.1
(3) 		63.1
(1.5) 		46.3
(-0.7) 		28.5
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 72
(-3)
A 		72
(-3)
A 		133
(2.3)
P 		140.8
(3)
P 		96.6
(-0.9)
M 		106.2
(-0)
P 		69
B 83
(-2.1)
P 		87
(-1.5)
P 		117.6
(2.9)
P 		118.4
(3)
P 		93.5
(-0.6)
P 		76.8
(-3)
P 		42
C 99.8
(-2.3)
P 		98.5
(-2.4)
P 		135.1
(0.6)
P 		163.9
(3)
P 		90.7
(-3)
P 		104.3
(-1.9)
P 		73
avr 84.9
(-3) 		85.8
(-2.9) 		128.6
(1.7) 		141
(3) 		93.6
(-2.1) 		95.8
(-1.8) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.1
(3)
P 		14.5
(-0.4)
P 		7.3
(-2.5)
A 		5.6
(-3)
A 		21
B 22.8
(3)
P 		17.9
(1.6)
A 		13.1
(0.2)
A 		1.7
(-3)
A 		21
C 27.1
(3)
P 		14.4
(-0.7)
A 		18.9
(0.6)
P 		6.7
(-3)
A 		20
avr 25.3
(3) 		15.6
(0.2) 		13.1
(-0.6) 		4.7
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 13.3
(-3)
A 		25.6
(0.3)
A 		29
(1.2)
P 		35.7
(3)
P 		29.2
(1.3)
M 		25.8
(0.3)
P 		22
B 28.9
(-2.8)
P 		29
(-2.7)
P 		28.6
(-3)
P 		31.4
(-1.2)
P 		38
(3)
P 		28.6
(-3)
P 		9
C 37
(3)
P 		30.1
(-2.4)
P 		34.4
(0.9)
P 		33
(-0.2)
P 		29.4
(-3)
P 		34.9
(1.3)
P 		8
avr 26.4
(-3) 		28.2
(-1.5) 		30.7
(0.7) 		33.4
(3) 		32.2
(2) 		29.8
(-0.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177238_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10873
Sequence Type Exemplar sequence
Representative Public ID M57.1 NCBI
Target Description M57.1 /REP_DB=WormBase Gene ID /WP=CE19540 /TR=Q9TYX9 /GB=AAC68984.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067967(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067967 NCBI Caenorhabditis elegans M57.1 (M57.1) mRNA, complete cds. 11/11 A 
SNAP00000011891 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3533648:3539000:1 11/11 None
GENEFINDER00000011894 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3533648:3539000:1 11/11 None
M57.1 ENSEMBL cdna:known chromosome:CEL140:IV:3533637:3539042:1 gene:M57.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3533653-3539006(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M57.1
Entrez Gene 177114 Entrez gene
SwissProt Q9TYX9 EMBL-EBI
WormBase CE19540 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68984 Hypothetical protein M57.1 [Caenorhabditis elegans] ref|NP_500368.1| M57.1 [Caenorhabditis elegans] 0.0
blast AAC02565 Hypothetical protein B0212.3 [Caenorhabditis elegans] ref|NP_500369.1| B0212.3 [Caenorhabditis elegans] 0.0
blast AAC16990 Hypothetical protein B0205.1 [Caenorhabditis elegans] ref|NP_492805.2| B0205.1 [Caenorhabditis elegans] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 4.0E-57
Pfam IPR006570 EMBL-EBI SPK 3.9E-63
Pfam IPR006570 EMBL-EBI SPK 1.9E-62
Pfam IPR006570 EMBL-EBI SPK 2.2E-16
Pfam IPR006570 EMBL-EBI SPK 1.9E-10
Sequence
Target Sequence 
>C. ELEGANS:177238_AT
gtaatctaacgacgaacggtccatcatcgaatgcacaggagtggtctaacgacgagccaa
agcaggagcctgtattcgaggatatcttcattcaaaatcaacactttccttcagaaattg
aagatgttccaattcaagaaattcgccgtattgagccagacaccaagcttgcctatttga
acataggatcaagtgtgcaaggagctgtaattactgattctggcgagatcaagcttcata
aat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAATCTAACGACGAACGGTCCATC 334 461 1391 Antisense
ACAGGAGTGGTCTAACGACGAGCCA 543 105 1425 Antisense
ACGACGAGCCAAAGCAGGAGCCTGT 511 91 1439 Antisense
GCAGGAGCCTGTATTCGAGGATATC 267 311 1452 Antisense
GTATTCGAGGATATCTTCATTCAAA 354 453 1462 Antisense
TTCAAAATCAACACTTTCCTTCAGA 227 685 1481 Antisense
GAAATTCGCCGTATTGAGCCAGACA 452 363 1528 Antisense
TATTGAGCCAGACACCAAGCTTGCC 78 659 1539 Antisense
GACACCAAGCTTGCCTATTTGAACA 565 365 1549 Antisense
GGAGCTGTAATTACTGATTCTGGCG 49 521 1591 Antisense
TCTGGCGAGATCAAGCTTCATAAAT 583 607 1609 Antisense
Sequence Source Affymetrix Proprietary Database