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[177237_at]

Description Y71G10AR.A /REP_DB=WormBase Gene ID /WP=CE25574 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60868.1
Cluster 6grp_total > 37      4grp_total > 50      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 25.6
(-1.4)
P 		73.8
(3)
P 		65.7
(2.3)
A 		8
(-3)
A 		66
B 31
(-1.3)
A 		52.2
(3)
A 		44.8
(1.5)
A 		22.9
(-3)
A 		29
C 2.1
(-3)
A 		39.7
(3)
A 		9
(-1.9)
A 		27.3
(1)
A 		38
avr 19.6
(-3) 		55.2
(3) 		39.8
(0.4) 		19.4
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 40.2
(2.9)
A 		38.2
(2.5)
P 		4
(-3)
A 		34.1
(1.9)
A 		41
(3)
A 		25.7
(0.5)
A 		37
B 7.7
(-3)
A 		14.4
(-1.3)
A 		26.4
(1.7)
A 		15.6
(-1)
A 		10.4
(-2.3)
A 		31.4
(3)
A 		24
C 30.2
(3)
A 		22.7
(1.4)
A 		21.1
(1.1)
A 		3.6
(-2.6)
A 		1.7
(-3)
A 		8.6
(-1.5)
A 		29
avr 26
(3) 		25.1
(2.4) 		17.2
(-3) 		17.8
(-2.6) 		17.7
(-2.7) 		21.9
(0.2) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 9.3
(0)
P 		16
(2.6)
P 		17.2
(3)
A 		1.2
(-3)
A 		16
B 9.9
(0.8)
A 		12.9
(3)
A 		10.4
(1.1)
A 		4.9
(-3)
A 		8
C 0.7
(-3)
A 		11.4
(3)
A 		3.1
(-1.7)
A 		4.6
(-0.8)
A 		11
avr 6.6
(-1.2) 		13.4
(3) 		10.2
(1) 		3.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 7.4
(0.1)
A 		13.6
(3)
P 		0.9
(-3)
A 		8.7
(0.7)
A 		12.4
(2.4)
A 		6.3
(-0.4)
A 		13
B 2.7
(-3)
A 		4.8
(-1.6)
A 		6.4
(-0.5)
A 		4.1
(-2.1)
A 		4.2
(-2)
A 		11.7
(3)
A 		9
C 11.2
(3)
A 		6.9
(0.6)
A 		5.4
(-0.3)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		2.9
(-1.7)
A 		11
avr 7.1
(1.1) 		8.4
(3) 		4.2
(-3) 		4.5
(-2.6) 		5.7
(-0.9) 		7
(1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177237_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19347
Sequence Type Exemplar sequence
Representative Public ID Y71G10AR.A NCBI
Target Description Y71G10AR.A /REP_DB=WormBase Gene ID /WP=CE25574 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60868.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067776
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067776 NCBI Caenorhabditis elegans Y71G10AR.3 (Y71G10AR.3) mRNA, complete cds. None
Y71G10AR.3 ENSEMBL cdna:known chromosome:CEL140:IV:2207925:2210373:-1 gene:Y71G10AR.3 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2206398-2210569(-) 72.97 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71G10AR.3
Entrez Gene 190594 Entrez gene
SwissProt Q9N2Y5 EMBL-EBI
WormBase CE36900 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60868 Hypothetical protein Y71G10AR.3 [Caenorhabditis elegans] ref|NP_500177.3| Y71G10AR.3 [Caenorhabditis elegans] 4.0E-95
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500177.3 2 164-181,187-206
Y71G10AR.3 2 164-181,187-206
Sequence
Target Sequence 
>C. ELEGANS:177237_AT
tcaaacggggaaacctgacacctctcaaaaaactgttgaaatttttttttcaaaaaaacg
aaattttcatacaaaaattaattttttttggcatttttttctcgttgctttttcaagatt
ttcaacaatttcctcgtcaaaaaacgttttcacactgcaactttttcctcacgagggacg
aggaaaagtggtttctaggccatggccgaggggccgacaagtttcagcggccatttatct
tgctttgttttccgcctgttttcttttgtttttcacagctttttcccatgctaaaacaat
ttccaagttaaaaaattgtgaattcagtgggcaagcagcggtgaaaggaatccgaatttc
gatacaatggaaatcgaaaatcacctccgatcaacgccgggccggtgagcattcggaaca
tgtagagattggtaagcgatccgaagatcaccacaaaaatcataacgaagatcacaaatg
gccgcataatcttccgggcctttgcggcccacgttggcttgaacttcttgatggctattc
cgatgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAACGGGGAAACCTGACACCTCT 531 627 552 Antisense
GAAACCTGACACCTCTCAAAAAACT 395 359 561 Antisense
CAAAAAACGTTTTCACACTGCAACT 450 191 689 Antisense
ATCGAAAATCACCTCCGATCAACGC 72 37 924 Antisense
ATCAACGCCGGGCCGGTGAGCATTC 392 27 941 Antisense
GGGCCGGTGAGCATTCGGAACATGT 91 493 950 Antisense
GTAAGCGATCCGAAGATCACCACAA 640 461 983 Antisense
AACGAAGATCACAAATGGCCGCATA 550 145 1015 Antisense
AATGGCCGCATAATCTTCCGGGCCT 57 161 1028 Antisense
CCCACGTTGGCTTGAACTTCTTGAT 30 259 1059 Antisense
ACTTCTTGATGGCTATTCCGATGAG 373 103 1074 Antisense
Sequence Source Affymetrix Proprietary Database