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[177236_s_at]

Description Y37E11AL.G /REP_DB=WormBase Gene ID /WP=CE21554 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59450.1
Cluster 6grp_total > 05      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 161
(3)
P 		72.9
(-1.2)
P 		35.7
(-3)
A 		141.1
(2)
A 		125
B 124.7
(2.6)
P 		130
(3)
A 		50.6
(-3)
A 		105.7
(1.2)
P 		79
C 130.6
(3)
P 		89.7
(0.2)
A 		41.4
(-3)
A 		113.3
(1.8)
A 		89
avr 138.8
(3) 		97.5
(0.4) 		42.6
(-3) 		120
(1.8) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 117.7
(3)
P 		104.8
(2)
P 		51.3
(-2.1)
A 		49.3
(-2.2)
P 		39
(-3)
A 		55
(-1.8)
A 		79
B 134.1
(3)
P 		78.6
(-0.3)
P 		46.6
(-2.3)
A 		61.7
(-1.4)
A 		55.9
(-1.7)
A 		34.4
(-3)
A 		100
C 107.3
(3)
P 		78.9
(1.1)
P 		64.1
(0.1)
A 		71.5
(0.6)
P 		85.6
(1.5)
M 		18.5
(-3)
A 		89
avr 119.7
(3) 		87.4
(0.7) 		54
(-1.7) 		60.8
(-1.2) 		60.2
(-1.3) 		36
(-3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 58.6
(3)
P 		15.8
(-2.2)
P 		9.3
(-3)
A 		20.7
(-1.6)
A 		49
B 39.8
(3)
P 		32.1
(1.4)
A 		11.7
(-3)
A 		22.5
(-0.7)
P 		28
C 43.2
(3)
P 		25.8
(-0.6)
A 		14.4
(-3)
A 		19.1
(-2)
A 		29
avr 47.2
(3) 		24.6
(-0.8) 		11.8
(-3) 		20.8
(-1.5) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 21.7
(-0.6)
P 		37.3
(3)
P 		11.2
(-3)
A 		12.5
(-2.7)
P 		11.8
(-2.9)
A 		13.4
(-2.5)
A 		26
B 46.7
(3)
P 		26.2
(-0.5)
P 		11.3
(-3)
A 		16.3
(-2.2)
A 		22.7
(-1.1)
A 		12.8
(-2.7)
A 		35
C 39.8
(3)
P 		24.1
(0.2)
P 		16.3
(-1.2)
A 		14.4
(-1.5)
P 		27.7
(0.8)
M 		6.2
(-3)
A 		34
avr 36.1
(3) 		29.2
(1.4) 		12.9
(-2.5) 		14.4
(-2.1) 		20.7
(-0.7) 		10.8
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177236_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19248
Sequence Type Exemplar sequence
Representative Public ID Y37E11AL.G NCBI
Target Description Y37E11AL.G /REP_DB=WormBase Gene ID /WP=CE21554 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59450.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067992(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067992 NCBI Caenorhabditis elegans Y37E11AL.5 (Y37E11AL.5) mRNA, complete cds. 11/11 A 
SNAP00000035931 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3656430:3661927:-1 11/11 None
GENEFINDER00000035947 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3658559:3668698:-1 11/11 None
Y37E11AL.5 ENSEMBL cdna:known chromosome:CEL140:IV:3658952:3662763:-1 gene:Y37E11AL.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3659095-3661933(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11AL.5
Entrez Gene 177127 Entrez gene
SwissProt Q9N451 EMBL-EBI
WormBase CE31636 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7218 neuropeptide signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF59450 Hypothetical protein Y37E11AL.5 [Caenorhabditis elegans] ref|NP_500393.2| Y37E11AL.5 [Caenorhabditis elegans] 0.0
blast AAF59448 Hypothetical protein Y37E11AL.6 [Caenorhabditis elegans] ref|NP_500395.1| Y37E11AL.6 [Caenorhabditis elegans] 0.0
blast CAE63779 Hypothetical protein CBG08318 [Caenorhabditis briggsae] 0.0
blast CAE63778 Hypothetical protein CBG08317 [Caenorhabditis briggsae] 1.0E-175
blast AAF59450 Hypothetical protein Y37E11AL.5 [Caenorhabditis elegans] ref|NP_500393.2| Y37E11AL.5 [Caenorhabditis elegans] 1.0E-135
blast CAE63778 Hypothetical protein CBG08317 [Caenorhabditis briggsae] 5.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR000203 EMBL-EBI GPS domain 1.7E-6
Pfam IPR000203 EMBL-EBI GPS domain 1.7E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500393.2 6 178-200,207-229,244-266,290-312,338-360,367-389
Y37E11AL.5 6 178-200,207-229,244-266,290-312,338-360,367-389
SNAP00000035931 6 13-35,50-72,93-115,137-159,180-202,208-230
GENEFINDER00000035947 7 720-742,754-773,788-810,831-853,875-897,918-940,946-968
Sequence
Target Sequence 
>C. ELEGANS:177236_S_AT
acggattggcttttcatctccaactaccttctaccgaccgcagttttattctcaatttcc
gtggtttacgctatatggaatgtttatatcgctagtggaacaagaaccaatcgccgctgc
tcctcggacaggcttcttgccttgggacctgccataagtgcctctgtttcttcgcttttt
atggtgttctgtttctgctcggcactgctcctattcttcttccgtgagcactccccaatg
gccatatttttcttttgcctgttccagtttttccacgtggttattgcctttttcttcgct
tcgtatttgttcagactccgtttcctactgcagcggggctttgacagtaacgattccacg
gactctctcgaacgaaaacgcgacatttcccgagccctactggagcacgtcgacaccaaa
agtgacatcacctcgaagcacgtggtagtcgacggaggctttaccgaggcaggcttcacc
ccggcaactcattaccagtactccccgtcggagtatatcccacctggctccatgacccaa
atcgacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGATTGGCTTTTCATCTCCAACT 64 97 397 Antisense
TACCGACCGCAGTTTTATTCTCAAT 143 649 428 Antisense
TTGCCTTGGGACCTGCCATAAGTGC 199 701 533 Antisense
TCTTCGCTTTTTATGGTGTTCTGTT 246 617 565 Antisense
CACTCCCCAATGGCCATATTTTTCT 100 199 625 Antisense
TCCACGTGGTTATTGCCTTTTTCTT 49 589 668 Antisense
TCGCTTCGTATTTGTTCAGACTCCG 588 589 692 Antisense
GACAGTAACGATTCCACGGACTCTC 341 369 739 Antisense
GACATCACCTCGAAGCACGTGGTAG 77 371 820 Antisense
GTCGACGGAGGCTTTACCGAGGCAG 16 473 844 Antisense
TGGCTCCATGACCCAAATCGACAAT 194 545 921 Antisense
Sequence Source Affymetrix Proprietary Database