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[177235_s_at]

Description DH11.2 /REP_DB=WormBase Gene ID /WP=CE27900 /TR=Q19014 /GB=CAA88939.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 74      6grp_total > 65      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 669.5
(3)
P 		509.9
(-3)
P 		514.5
(-2.8)
P 		633.6
(1.7)
P 		160
B 636
(0.7)
P 		568
(-1.1)
P 		497.7
(-3)
P 		719.1
(3)
P 		221
C 651.9
(1.5)
P 		500
(-3)
P 		601.7
(-0)
P 		704.1
(3)
P 		204
avr 652.5
(1.8) 		526
(-3) 		538
(-2.5) 		685.6
(3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 469
1 2 3 4 5 6 range
A 616.8
(-0.6)
P 		528.4
(-3)
P 		752.7
(3)
P 		701.8
(1.6)
P 		610.2
(-0.8)
P 		701.4
(1.6)
P 		224
B 413.4
(-3)
P 		561.5
(-0.9)
P 		814.8
(2.7)
P 		769.4
(2)
P 		563.8
(-0.9)
P 		838.5
(3)
P 		425
C 467.6
(-3)
P 		648.5
(-0.4)
P 		712.1
(0.5)
P 		722.1
(0.7)
P 		575.4
(-1.4)
P 		882
(3)
P 		414
avr 499.3
(-3) 		579.5
(-1.4) 		759.9
(2.1) 		731.1
(1.5) 		583.1
(-1.4) 		807.3
(3) 		308
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 243.8
(3)
P 		110.7
(-2.3)
P 		134.5
(-1.3)
P 		92.7
(-3)
P 		151
B 202.8
(3)
P 		140.3
(-1.3)
P 		115.3
(-3)
P 		153.2
(-0.4)
P 		88
C 215.8
(3)
P 		143.8
(-1.4)
P 		209.7
(2.6)
P 		118.7
(-3)
P 		97
avr 220.8
(3) 		131.6
(-2.4) 		153.2
(-1.1) 		121.5
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 113.7
(-3)
P 		187.9
(3)
P 		163.9
(1.1)
P 		178
(2.2)
P 		184.1
(2.7)
P 		170.8
(1.6)
P 		74
B 143.8
(-3)
P 		186.9
(-1.5)
P 		197.9
(-1.1)
P 		203.8
(-0.9)
P 		229.1
(0)
P 		312.7
(3)
P 		169
C 173.3
(-1.9)
P 		197.9
(-0.9)
P 		181.2
(-1.6)
P 		145.2
(-3)
P 		186.2
(-1.4)
P 		295.2
(3)
P 		150
avr 143.6
(-3) 		190.9
(-0.6) 		181
(-1.1) 		175.7
(-1.3) 		199.8
(-0.1) 		259.6
(3) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177235_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3766
Sequence Type Exemplar sequence
Representative Public ID DH11.2 NCBI
Target Description DH11.2 /REP_DB=WormBase Gene ID /WP=CE27900 /TR=Q19014 /GB=CAA88939.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063275(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063275 NCBI Caenorhabditis elegans DH11.2 (DH11.2) mRNA, complete cds. 11/11 None
SNAP00000004562 ENSEMBL cdna:SNAP chromosome:CEL140:II:8012757:8014903:1 11/11 None
GENEFINDER00000004571 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8012757:8014903:1 11/11 None
DH11.2 ENSEMBL cdna:known chromosome:CEL140:II:8012738:8015503:1 gene:DH11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8012753-8014900(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl DH11.2
Entrez Gene 174283 Entrez gene
SwissProt Q19014 EMBL-EBI
WormBase CE27900 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88939 Hypothetical protein DH11.2 [Caenorhabditis elegans] ref|NP_495676.1| DH11.2 [Caenorhabditis elegans] 0.0
blast CAE67779 Hypothetical protein CBG13354 [Caenorhabditis briggsae] 1.0E-177
Sequence
Target Sequence 
>C. ELEGANS:177235_S_AT
gatggtctggtcctgcaaatttgaatagataccgtaataagatgttcatttgttacattc
gaactatgatggacttatcattgcaaataaatcaattggaattggtcgataaacgaaaag
cttcaccgtacatgctggtcatggcccatggaagaagaaccatttatatgttcccggaat
ttaaaatatgtcgaagtttggttatttgctatgatattggacttattgctcctgtgttca
gccacgagaatgatcgatttgatgatttgatgcattttgaggttgacgaatctcatgtac
tgtataaggctgacctactggaatatctgaaatcggctcacgaacttcgtgaagtacgcg
ttgttattccttcaactttttattcgagggtttcccgatgtactgaagggtgtttttcga
atccagattttgcttgcttcagagctgatgggtggtgtagtgttccagccaaacttcctg
gcgctcatttcgagattgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGTCTGGTCCTGCAAATTTGAA 507 407 788 Antisense
AAAGCTTCACCGTACATGCTGGTCA 523 123 904 Antisense
TACATGCTGGTCATGGCCCATGGAA 118 645 916 Antisense
TTGGACTTATTGCTCCTGTGTTCAG 584 705 1004 Antisense
GAGGTTGACGAATCTCATGTACTGT 502 403 1066 Antisense
AAGGCTGACCTACTGGAATATCTGA 451 161 1093 Antisense
GTACGCGTTGTTATTCCTTCAACTT 572 457 1141 Antisense
ATTCGAGGGTTTCCCGATGTACTGA 292 3 1169 Antisense
CGAATCCAGATTTTGCTTGCTTCAG 239 253 1205 Antisense
TGTAGTGTTCCAGCCAAACTTCCTG 37 559 1243 Antisense
TTCCTGGCGCTCATTTCGAGATTGT 187 699 1262 Antisense
Sequence Source Affymetrix Proprietary Database