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[177234_at]

Description M57.2 /REP_DB=WormBase Gene ID /WP=CE19541 /TR=Q9TYY0 /GB=AAC68985.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 19      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 72      6grp_total > 29      4grp_total > 60      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 494.6
(3)
P 		339
(-1.3)
P 		426.8
(1.1)
P 		279.9
(-3)
P 		215
B 330.4
(-1.2)
P 		418.9
(1.1)
P 		495.9
(3)
P 		257
(-3)
P 		239
C 431.1
(2.5)
P 		447.1
(3)
P 		423.9
(2.3)
P 		241
(-3)
P 		206
avr 418.7
(2) 		401.7
(1.5) 		448.9
(3) 		259.3
(-3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 559.7
(3)
P 		432.1
(-1)
P 		427.3
(-1.1)
P 		368.1
(-3)
P 		459.4
(-0.1)
P 		509
(1.4)
P 		192
B 529.4
(2.6)
P 		416.7
(-0.8)
P 		342.3
(-3)
P 		443.2
(0)
P 		541.2
(3)
P 		442.7
(0)
P 		199
C 522.1
(2)
P 		383.6
(-2.5)
P 		469.1
(0.3)
P 		390.8
(-2.2)
P 		554.8
(3)
P 		367
(-3)
P 		188
avr 537.1
(3) 		410.8
(-2.6) 		412.9
(-2.5) 		400.7
(-3) 		518.5
(2.2) 		439.6
(-1.3) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 180.1
(3)
P 		73.6
(-1.6)
P 		111.6
(0)
P 		41
(-3)
P 		139
B 105.4
(2.1)
P 		103.5
(1.9)
P 		114.9
(3)
P 		54.8
(-3)
P 		60
C 142.7
(2.7)
P 		128.6
(1.9)
P 		147.7
(3)
P 		40.6
(-3)
P 		107
avr 142.7
(3) 		101.9
(0.5) 		124.7
(1.9) 		45.5
(-3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 103.2
(-2)
P 		153.7
(3)
P 		93.1
(-3)
P 		93.4
(-3)
P 		138.6
(1.5)
P 		123.9
(0)
P 		61
B 184.2
(1.4)
P 		138.7
(-0.6)
P 		83.1
(-3)
P 		117.4
(-1.5)
P 		219.9
(3)
P 		165.1
(0.6)
P 		137
C 193.5
(3)
P 		117
(-1)
P 		119.4
(-0.9)
P 		78.6
(-3)
P 		179.5
(2.3)
P 		122.8
(-0.7)
P 		115
avr 160.3
(1.6) 		136.5
(-0.1) 		98.5
(-2.9) 		96.5
(-3) 		179.3
(3) 		137.3
(-0) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177234_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10705
Sequence Type Exemplar sequence
Representative Public ID M57.2 NCBI
Target Description M57.2 /REP_DB=WormBase Gene ID /WP=CE19541 /TR=Q9TYY0 /GB=AAC68985.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067966(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067966 NCBI Caenorhabditis elegans M57.2 (M57.2) mRNA, complete cds. 11/11 None
SNAP00000011890 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3527355:3532263:1 11/11 None
GENEFINDER00000011893 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3527355:3532635:1 11/11 None
M57.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:3527348:3532517:1 gene:M57.2 11/11 None
M57.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:3527350:3532517:1 gene:M57.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3527360-3532269(+) 99.71 100.0
Public Domain and Genome References
Gene Title
Ensembl M57.2
Entrez Gene 177113 Entrez gene
SwissProt Q9TYY0 EMBL-EBI
WormBase CE19541 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13444_S_AT geranylgeranyl transferase alpha subunit-related / RAB geranylgeranyltransferase alpha subunit-related at
ATH1-121501:254156_AT geranylgeranyl transferase alpha subunit-related / RAB geranylgeranyltransferase alpha subunit-related at
CANINE_2:CFAAFFX.18948.1.S1_AT similar to Rab geranylgeranyltransferase, alpha subunit cfa
DROSOPHILA_2:1638354_AT dm
DROSGENOME1:154565_AT dm
HG-U95AV2:111_AT Rab geranylgeranyltransferase, alpha subunit hs
HC-G110:111_AT Rab geranylgeranyltransferase, alpha subunit hs
HG-U95AV2:100_G_AT Rab geranylgeranyltransferase, alpha subunit hs
HC-G110:100_G_AT Rab geranylgeranyltransferase, alpha subunit hs
HG-U133A:203573_S_AT Rab geranylgeranyltransferase, alpha subunit hs
HG-FOCUS:203573_S_AT Rab geranylgeranyltransferase, alpha subunit hs
HG-U133_PLUS_2:203573_S_AT Rab geranylgeranyltransferase, alpha subunit hs
HG-U133A_2:203573_S_AT Rab geranylgeranyltransferase, alpha subunit hs
HU35KSUBB:RC_AA134052_S_AT Rab geranylgeranyltransferase, alpha subunit hs
HUGENEFL:Y08200_AT Rab geranylgeranyltransferase, alpha subunit hs
U133_X3P:G4759015_3P_X_AT Rab geranylgeranyltransferase, alpha subunit hs
U133_X3P:G4759015_3P_A_AT Rab geranylgeranyltransferase, alpha subunit hs
MOUSE430_2:1426046_A_AT Rab geranylgeranyl transferase, a subunit mm
MOE430A:1426046_A_AT Rab geranylgeranyl transferase, a subunit mm
MOUSE430A_2:1426046_A_AT Rab geranylgeranyl transferase, a subunit mm
MG-U74AV2:93851_AT Rab geranylgeranyl transferase, a subunit mm
MU11KSUBB:MSA.14310.0_S_AT Rab geranylgeranyl transferase, a subunit mm
MU11KSUBB:MSA.40635.0_S_AT Rab geranylgeranyl transferase, a subunit mm
MG-U74BV2:115743_AT Rab geranylgeranyl transferase, a subunit mm
MG-U74CV2:169752_R_AT Rab geranylgeranyl transferase, a subunit mm
MU19KSUBB:TC28240_AT Rab geranylgeranyl transferase, a subunit, mRNA (cDNA clone MGC:19255 IMAGE:3967218) mm
RG-U34A:S62096_S_AT Rab geranylgeranyl transferase, a subunit rn
RAE230A:1387869_S_AT Rab geranylgeranyl transferase, a subunit rn
RAT230_2:1387869_S_AT Rab geranylgeranyl transferase, a subunit rn
RAE230A:1369899_S_AT Rab geranylgeranyl transferase, a subunit rn
RAT230_2:1369899_S_AT Rab geranylgeranyl transferase, a subunit rn
RAE230B:1395727_AT Rab geranylgeranyl transferase, a subunit rn
RAT230_2:1395727_AT Rab geranylgeranyl transferase, a subunit rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
18346 protein amino acid prenylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8318 protein prenyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68985 Hypothetical protein M57.2 [Caenorhabditis elegans] ref|NP_500367.1| M57.2 [Caenorhabditis elegans] 0.0
blast CAE69024 Hypothetical protein CBG15026 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002088 EMBL-EBI Protein prenyltransferase, alpha subunit 3.2E-8
Pfam IPR002088 EMBL-EBI Protein prenyltransferase, alpha subunit 4.1E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011893 1 595-617
Sequence
Target Sequence 
>C. ELEGANS:177234_AT
taagtggccactctacatgcgaacactcgtgctcctcgaataccaaccaattaaatctta
cgaagaaatcatcaaaaatctcgaaaatctgtcagaaaacctggatcccaagcgctcgga
gctctacaaatcgctaatttcccgccaaaatttgaacttttcgattcgcgaacaattcga
gagaattttgggccccgacaccgattggctgacttgtagatattccaagctgactagttt
ggaaggagttgagtacttggccggatttgttggatctgcggatttttctggaaatcggct
gaaggaaattcagagaattgtgctcccgaatttgaaaagtctcacgattaatgagaatcc
gattgagagcctcccaccgagcccatgcctatcccatctgacattcttctcaattgccgg
cactcaaatcgcctctgtctccgccgtgatgcccttcttccagacaattccctctctgga
tcgtcttgtcttctgtgaaactccgctcgttgaaaaaaccgaagaacttcgtgctcagct
cc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGTGGCCACTCTACATGCGAACA 571 635 1182 Antisense
TGCTCCTCGAATACCAACCAATTAA 635 579 1211 Antisense
AAGCGCTCGGAGCTCTACAAATCGC 325 149 1291 Antisense
TCGAGAGAATTTTGGGCCCCGACAC 553 601 1358 Antisense
CCGACACCGATTGGCTGACTTGTAG 682 263 1376 Antisense
TGGCCGGATTTGTTGGATCTGCGGA 702 543 1439 Antisense
TGAGAATCCGATTGAGAGCCTCCCA 482 569 1533 Antisense
TCAATTGCCGGCACTCAAATCGCCT 609 633 1591 Antisense
GATCGTCTTGTCTTCTGTGAAACTC 448 417 1660 Antisense
TTCTGTGAAACTCCGCTCGTTGAAA 453 693 1672 Antisense
ACCGAAGAACTTCGTGCTCAGCTCC 198 89 1699 Antisense
Sequence Source Affymetrix Proprietary Database