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[177232_at]

Description Y46C8AL.L /REP_DB=WormBase Gene ID /WP=CE25298 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60606.1
Cluster 6grp_total > 38      4grp_total > 43      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 10.9
(-1.3)
A 		31.6
(3)
A 		5.7
(-2.4)
A 		3
(-3)
A 		29
B 3
(-3)
A 		10.5
(3)
A 		7.9
(0.9)
A 		9.5
(2.2)
A 		8
C 16.1
(3)
A 		11.5
(-0)
A 		14.9
(2.2)
A 		6.9
(-3)
A 		9
avr 10
(-1.2) 		17.9
(3) 		9.5
(-1.4) 		6.5
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 46.6
(1.7)
A 		10.4
(-2.7)
A 		17.3
(-1.9)
A 		8.3
(-3)
A 		9.5
(-2.9)
A 		57.5
(3)
A 		49
B 33.7
(2.4)
A 		11.3
(-1.6)
A 		3.3
(-3)
A 		9.3
(-1.9)
A 		37.3
(3)
A 		9
(-2)
A 		34
C 21.2
(-0.9)
A 		47.2
(3)
A 		9.2
(-2.7)
A 		7.3
(-3)
A 		9
(-2.7)
A 		10
(-2.6)
A 		40
avr 33.8
(3) 		23
(0.5) 		9.9
(-2.6) 		8.3
(-3) 		18.6
(-0.6) 		25.5
(1) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4
(0.3)
A 		6.9
(3)
A 		1.5
(-2)
A 		0.4
(-3)
A 		7
B 1
(-3)
A 		2.6
(3)
A 		1.8
(0)
A 		2
(0.8)
A 		2
C 5.3
(3)
A 		3.3
(0.1)
A 		5.2
(2.9)
A 		1.2
(-3)
A 		4
avr 3.4
(1.3) 		4.3
(3) 		2.8
(0.1) 		1.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.6
(0.3)
A 		3.7
(-2.2)
A 		3.8
(-2.1)
A 		2.1
(-3)
A 		2.9
(-2.6)
A 		14
(3)
A 		12
B 11.7
(1.6)
A 		3.8
(-1.7)
A 		0.8
(-3)
A 		2.5
(-2.3)
A 		15.1
(3)
A 		3.4
(-1.9)
A 		14
C 7.9
(-0)
A 		14.4
(3)
A 		2.3
(-2.6)
A 		1.5
(-3)
A 		2.9
(-2.3)
A 		3.3
(-2.2)
A 		13
avr 9.4
(3) 		7.3
(1.3) 		2.3
(-2.8) 		2
(-3) 		7
(1.1) 		6.9
(1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177232_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19280
Sequence Type Exemplar sequence
Representative Public ID Y46C8AL.L NCBI
Target Description Y46C8AL.L /REP_DB=WormBase Gene ID /WP=CE25298 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60606.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028304(10), NM_001028303(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028304 NCBI Caenorhabditis elegans Y46C8AL.9b (Y46C8AL.9) mRNA, complete cds. 10/11 None
NM_001028303 NCBI Caenorhabditis elegans Y46C8AL.9a (Y46C8AL.9) mRNA, complete cds. 10/11 None
Y46C8AL.9a ENSEMBL cdna:known chromosome:CEL140:IV:3960728:3964372:1 gene:Y46C8AL.9 10/11 None
Y46C8AL.9b ENSEMBL cdna:known chromosome:CEL140:IV:3960728:3964651:1 gene:Y46C8AL.9 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030674 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3959531-3961944(+) 95.94 100.0
Public Domain and Genome References
Ensembl Y46C8AL.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023475 Y46C8AL.9b [Caenorhabditis elegans] 0.0
blast NP_001023474 Y46C8AL.9a [Caenorhabditis elegans] 0.0
blast NP_500438 F56D6.1 [Caenorhabditis elegans] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-5
Sequence
Target Sequence 
>C. ELEGANS:177232_AT
ggactgcccgttggctatactaactttggtagccacgttggagaaaactatttttatgag
aaaatctcaaatacgaaatgggatactctgggagataatgatgtgaattattttgtgtgt
agttatgatccaatggttaaaccatcgacaatgatgacaagtacaatgaaaagcacaacg
accaccgaattggtaaatccttcttgccaacatgatgataagaaaattgttttctttgct
tactcaaatgatctggatccaactgttctgttgaacgcattgcgtgataactatttgtat
tatagcaacgtcagttttgcggttgcgagattcgatgctcttgagccattcactatttcg
tactttagtgtatatcaaaaatttgaattttccggcaaattttgtcgtagggcgagatgg
atgccactagaagaaaaatatccaatctacgcagtcaacgcaagagtttctggaaatggg
tctcaagtgcttcctccaatgtccgtgccacgaatggatgatttcttgatggtgatcaca
cttcaaagccatggtaggcctgcatatgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTGCCCGTTGGCTATACTAACT 328 523 619 Antisense
AAAAGCACAACGACCACCGAATTGG 186 133 787 Antisense
GGTAAATCCTTCTTGCCAACATGAT 628 503 810 Antisense
GAAAATTGTTTTCTTTGCTTACTCA 519 353 840 Antisense
GGATCCAACTGTTCTGTTGAACGCA 8 513 873 Antisense
AACGTCAGTTTTGCGGTTGCGAGAT 671 141 925 Antisense
TGCGAGATTCGATGCTCTTGAGCCA 329 583 942 Antisense
GAGCCATTCACTATTTCGTACTTTA 389 385 961 Antisense
TATCCAATCTACGCAGTCAACGCAA 680 657 1057 Antisense
GTCCGTGCCACGAATGGATGATTTC 237 477 1119 Antisense
AAGCCATGGTAGGCCTGCATATGTT 101 149 1164 Antisense
Sequence Source Affymetrix Proprietary Database