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[177231_at]

Description Y73B6BL.O /REP_DB=WormBase Gene ID /WP=CE26288 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23474.1
Cluster 6grp_total > 0      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 16.9
(-2.2)
A 		11.6
(-3)
A 		50.3
(3)
A 		15.6
(-2.4)
A 		39
B 7.8
(-2.6)
A 		65.3
(3)
A 		3.7
(-3)
A 		58.3
(2.3)
A 		62
C 53.6
(3)
A 		15.1
(-3)
A 		30.6
(-0.6)
A 		36.6
(0.4)
A 		39
avr 26.1
(-3) 		30.7
(-0.4) 		28.2
(-1.8) 		36.8
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 9.5
(-3)
A 		33.2
(2.6)
A 		17.8
(-1)
A 		35
(3)
A 		27.1
(1.1)
A 		17.7
(-1.1)
A 		26
B 37.5
(0.7)
A 		9.6
(-2.5)
A 		57.2
(3)
A 		4.8
(-3)
A 		39.1
(0.9)
A 		47
(1.8)
A 		52
C 5.3
(-3)
A 		94.7
(3)
A 		12.9
(-2.5)
A 		58.8
(0.6)
A 		33.9
(-1.1)
A 		36.4
(-0.9)
A 		89
avr 17.4
(-3) 		45.8
(3) 		29.3
(-0.5) 		32.9
(0.3) 		33.4
(0.4) 		33.7
(0.4) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 6.1
(-0.9)
A 		2.5
(-2.9)
A 		13.2
(3)
A 		2.3
(-3)
A 		11
B 2.5
(-2.3)
A 		16.1
(3)
A 		0.8
(-3)
A 		12.4
(1.5)
A 		15
C 17.7
(3)
A 		4.4
(-3)
A 		10.7
(-0.2)
A 		6.2
(-2.2)
A 		13
avr 8.8
(3) 		7.7
(-0.7) 		8.2
(1) 		7
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.7
(-3)
A 		11.8
(3)
A 		3.9
(-1.7)
A 		8.9
(1.3)
A 		8.2
(0.9)
A 		4.3
(-1.5)
A 		10
B 13
(1.3)
A 		3.2
(-2.3)
A 		13.9
(1.7)
A 		1.3
(-3)
A 		15.9
(2.4)
A 		17.5
(3)
A 		16
C 2
(-3)
A 		28.9
(3)
A 		3.3
(-2.7)
A 		11.8
(-0.8)
A 		11
(-1)
A 		12.2
(-0.7)
A 		27
avr 5.6
(-3) 		14.6
(3) 		7
(-2.1) 		7.3
(-1.9) 		11.7
(1.1) 		11.3
(0.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177231_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19188
Sequence Type Exemplar sequence
Representative Public ID Y73B6BL.O NCBI
Target Description Y73B6BL.O /REP_DB=WormBase Gene ID /WP=CE26288 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23474.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068569(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068569 NCBI Caenorhabditis elegans Y73B6BL.14 (Y73B6BL.14) mRNA, complete cds. 11/11 None
SNAP00000032042 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6341343:6342900:-1 10/11 None
Y73B6BL.14 ENSEMBL cdna:known chromosome:CEL140:IV:6342504:6342900:-1 gene:Y73B6BL.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032089 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6342509-6342906(-) 97.67 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B6BL.14
Entrez Gene 190650 Entrez gene
SwissProt Q9GUG2 EMBL-EBI
WormBase CE26288 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23474 Hypothetical protein Y73B6BL.14 [Caenorhabditis elegans] ref|NP_500970.1| Y73B6BL.14 [Caenorhabditis elegans] 3.0E-51
blast AAG23474 Hypothetical protein Y73B6BL.14 [Caenorhabditis elegans] ref|NP_500970.1| Y73B6BL.14 [Caenorhabditis elegans] 4.0E-40
blast CAA94896 Hypothetical protein K07C5.3 [Caenorhabditis elegans] ref|NP_505659.1| K07C5.3 [Caenorhabditis elegans] 8.0E-15
blast CAE67538 Hypothetical protein CBG13063 [Caenorhabditis briggsae] 4.0E-13
blast CAA94896 Hypothetical protein K07C5.3 [Caenorhabditis elegans] ref|NP_505659.1| K07C5.3 [Caenorhabditis elegans] 4.0E-13
blast CAE67538 Hypothetical protein CBG13063 [Caenorhabditis briggsae] 6.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500970.1 1 74-96
Y73B6BL.14 1 74-96
Sequence
Target Sequence 
>C. ELEGANS:177231_AT
tgagatcttcgacatctgctcactcttggaaagttgcccagataatagggggaaaactga
tgtcatctcaacactccttggatctgataatttcgatggagacttgttgctgtggctgag
attcctcattcgtgagtctgacccaagaaagtacaacctggccgacaagaagctcatcaa
cttattatcaaaggttttgaatatattatttttcacatcactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGATCTTCGACATCTGCTCACTC 254 569 60 Antisense
GACATCTGCTCACTCTTGGAAAGTT 180 369 70 Antisense
AGGGGGAAAACTGATGTCATCTCAA 135 59 106 Antisense
TCATCTCAACACTCCTTGGATCTGA 707 619 122 Antisense
GATGGAGACTTGTTGCTGTGGCTGA 528 407 154 Antisense
CTGTGGCTGAGATTCCTCATTCGTG 626 239 169 Antisense
CCTCATTCGTGAGTCTGACCCAAGA 116 269 183 Antisense
GACCCAAGAAAGTACAACCTGGCCG 590 379 199 Antisense
AACCTGGCCGACAAGAAGCTCATCA 511 145 214 Antisense
GAAGCTCATCAACTTATTATCAAAG 286 343 228 Antisense
GAATATATTATTTTTCACATCACTT 49 327 258 Antisense
Sequence Source Affymetrix Proprietary Database