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[177230_at]

Description R17.1 /REP_DB=WormBase Gene ID /WP=CE16314 /TR=O18004 /GB=CAB07270.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 7
(0.4)
A 		9.2
(3)
A 		4.7
(-2.3)
A 		4.1
(-3)
A 		5
B 7.3
(3)
A 		2.6
(-2.1)
A 		1.8
(-3)
A 		2
(-2.8)
A 		6
C 4.1
(-3)
A 		10
(-1.2)
A 		10.1
(-1.2)
A 		23.6
(3)
A 		20
avr 6.1
(-2.2) 		7.3
(-0.5) 		5.5
(-3) 		9.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 58.3
(3)
A 		2.8
(-3)
A 		18.3
(-1.3)
A 		10.4
(-2.2)
A 		5.6
(-2.7)
A 		48.9
(2)
A 		56
B 17.2
(-0.9)
A 		18.3
(-0.8)
A 		3.9
(-3)
A 		5.9
(-2.7)
A 		12.7
(-1.6)
A 		42.3
(3)
A 		38
C 3
(-2.8)
A 		20
(0.6)
A 		2
(-3)
A 		8.9
(-1.6)
A 		5.5
(-2.3)
A 		31.8
(3)
A 		30
avr 26.2
(0.3) 		13.7
(-1.9) 		8.1
(-3) 		8.4
(-2.9) 		7.9
(-3) 		41
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.6
(3)
A 		2
(1.2)
A 		1.2
(-1.2)
A 		0.6
(-3)
A 		2
B 2.3
(3)
A 		0.6
(-2.4)
A 		0.4
(-3)
A 		0.4
(-3)
A 		2
C 1.4
(-3)
A 		2.9
(0.5)
A 		3.5
(1.8)
A 		4
(3)
A 		3
avr 2.1
(3) 		1.8
(-1.5) 		1.7
(-3) 		1.7
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 10.7
(2.3)
A 		1
(-3)
A 		4
(-1.3)
A 		2.6
(-2.1)
A 		1.7
(-2.6)
A 		11.9
(3)
A 		11
B 6
(-0.9)
A 		6.1
(-0.9)
A 		0.9
(-3)
A 		1.6
(-2.7)
A 		5.2
(-1.3)
A 		15.8
(3)
A 		15
C 1.1
(-2.6)
A 		6.1
(0.3)
A 		0.5
(-3)
A 		1.8
(-2.2)
A 		1.8
(-2.2)
A 		10.6
(3)
A 		10
avr 5.9
(-0.8) 		4.4
(-1.6) 		1.8
(-3) 		2
(-2.9) 		2.9
(-2.4) 		12.8
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177230_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7702
Sequence Type Exemplar sequence
Representative Public ID R17.1 NCBI
Target Description R17.1 /REP_DB=WormBase Gene ID /WP=CE16314 /TR=O18004 /GB=CAB07270.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066988(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066988 NCBI Caenorhabditis elegans R17.1 (R17.1) mRNA, complete cds. 11/11 None
GENEFINDER00000033124 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10840510:10848544:-1 11/11 None
R17.1 ENSEMBL cdna:known chromosome:CEL140:III:10847622:10848544:-1 gene:R17.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033120 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10847617-10848540(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R17.1
Entrez Gene 187876 Entrez gene
SwissProt O18004 EMBL-EBI
WormBase CE16314 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07271 Hypothetical protein R17.2 [Caenorhabditis elegans] ref|NP_499388.1| R17.2 [Caenorhabditis elegans] 0.0
blast CAE71394 Hypothetical protein CBG18301 [Caenorhabditis briggsae] 0.0
blast CAB07270 Hypothetical protein R17.1 [Caenorhabditis elegans] ref|NP_499389.1| R17.1 [Caenorhabditis elegans] 1.0E-162
blast CAB07270 Hypothetical protein R17.1 [Caenorhabditis elegans] ref|NP_499389.1| R17.1 [Caenorhabditis elegans] 1.0E-160
blast CAI06058 Hypothetical protein C44B9.6 [Caenorhabditis elegans] ref|NP_001021216.1| C44B9.6 [Caenorhabditis elegans] 4.0E-49
blast CAB04877 Hypothetical protein T27E9.8 [Caenorhabditis elegans] ref|NP_499788.1| T27E9.8 [Caenorhabditis elegans] 1.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-6
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 9.2E-22
Sequence
Target Sequence 
>C. ELEGANS:177230_AT
atttctagaccatatccttgacattttccatcaacaaaaagtttctcaactgacgattag
tagttacgattaccaatccatcattgaagaattcgatagcttaaatatcgaaacattaca
ctttacatctccttacatggacacttttcacggaaacctattgaagagatgttcatggaa
ttttgatgaattgctcctaagctgtttctccccgagagttcaagattttcaagcagtcac
ctgttgtaactttaaaaacattatgataaagcaagacgaatcaattaaattggaagactt
actagtttcaaatatttccgaaatacttatgcatacactattacccctaacagatatttg
cctatttttgaaacactggatcaatggatcaaatcaatggctggagattttgattatgta
tgcccaaaacggttcaaatttggacgagttcactacaattgccttgaatggaattgatta
tcaaaaaccaccaactgatggaaaattggacgattttgaagtatttaatatccgacgaaa
ggatgggactgcagcgactattacattattcaattctcctaggtatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCTAGACCATATCCTTGACATT 100 17 255 Antisense
AACATTACACTTTACATCTCCTTAC 161 139 366 Antisense
CCTTACATGGACACTTTTCACGGAA 228 267 385 Antisense
TGAATTGCTCCTAAGCTGTTTCTCC 633 575 441 Antisense
CTGTTTCTCCCCGAGAGTTCAAGAT 550 239 456 Antisense
CAAGCAGTCACCTGTTGTAACTTTA 413 179 484 Antisense
ACTTATGCATACACTATTACCCCTA 228 103 579 Antisense
ATTACCCCTAACAGATATTTGCCTA 520 5 594 Antisense
GGACGAGTTCACTACAATTGCCTTG 284 523 696 Antisense
GGATGGGACTGCAGCGACTATTACA 88 515 795 Antisense
CATTATTCAATTCTCCTAGGTATCC 673 215 818 Antisense
Sequence Source Affymetrix Proprietary Database