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[177229_at]

Description Y45G5AM.F /REP_DB=WormBase Gene ID /WP=CE26403 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23363.1
Cluster 6grp_total > 77      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 1
(-3)
A 		3.7
(-2.8)
A 		15.3
(-1.8)
A 		71.3
(3)
M 		70
B 5.7
(-2.1)
A 		1.5
(-3)
A 		3.7
(-2.5)
A 		29.2
(3)
A 		28
C 1.9
(-2.9)
A 		4.3
(-2.4)
A 		1.4
(-3)
A 		31.4
(3)
A 		30
avr 2.9
(-3) 		3.2
(-3) 		6.8
(-2.4) 		44
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 6.2
(-2.6)
A 		1.6
(-3)
A 		3.1
(-2.9)
A 		27
(-1)
A 		38.2
(-0.1)
A 		77.3
(3)
P 		76
B 13.5
(-2.4)
A 		13.8
(-2.4)
A 		1.2
(-3)
A 		4.2
(-2.9)
A 		18.5
(-2.2)
A 		128.6
(3)
P 		127
C 2.6
(-3)
A 		40.3
(-1.1)
P 		3.2
(-3)
A 		2.2
(-3)
A 		9.2
(-2.7)
A 		124.8
(3)
P 		123
avr 7.4
(-2.7) 		18.6
(-2.1) 		2.5
(-3) 		11.1
(-2.5) 		22
(-1.9) 		110.2
(3) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.4
(-3)
A 		0.8
(-2.8)
A 		4
(-0.8)
A 		10.4
(3)
M 		10
B 1.8
(-1.6)
A 		0.4
(-3)
A 		0.9
(-2.5)
A 		6.2
(3)
A 		6
C 0.6
(-2.9)
A 		1.2
(-2.1)
A 		0.5
(-3)
A 		5.3
(3)
A 		5
avr 0.9
(-2.9) 		0.8
(-3) 		1.8
(-2.1) 		7.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 1.1
(-2.8)
A 		0.6
(-3)
A 		0.7
(-3)
A 		6.8
(-1)
A 		11.5
(0.6)
A 		18.8
(3)
P 		18
B 4.7
(-2.4)
A 		4.6
(-2.5)
A 		0.3
(-3)
A 		1.1
(-2.9)
A 		7.5
(-2.1)
A 		48
(3)
P 		48
C 1
(-2.9)
A 		12.3
(-1.3)
P 		0.8
(-2.9)
A 		0.4
(-3)
A 		3
(-2.6)
A 		41.8
(3)
P 		41
avr 2.3
(-2.7) 		5.8
(-2.1) 		0.6
(-3) 		2.8
(-2.6) 		7.3
(-1.9) 		36.2
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177229_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19517
Sequence Type Exemplar sequence
Representative Public ID Y45G5AM.F NCBI
Target Description Y45G5AM.F /REP_DB=WormBase Gene ID /WP=CE26403 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23363.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071756(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071756 NCBI Caenorhabditis elegans Y45G5AM.5 (Y45G5AM.5) mRNA, complete cds. 10/11 None
SNAP00000024441 ENSEMBL cdna:SNAP chromosome:CEL140:V:4160200:4160703:1 10/11 None
GENEFINDER00000024452 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4160200:4160703:1 10/11 None
Y45G5AM.5 ENSEMBL cdna:known chromosome:CEL140:V:4160200:4160703:1 gene:Y45G5AM.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4160199-4160703(+) 95.53 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45G5AM.5
Entrez Gene 178816 Entrez gene
SwissProt Q9GUJ1 EMBL-EBI
WormBase CE33342 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504157 Y45G5AM.5 [Caenorhabditis elegans] gb|AAG23363.2| Hypothetical protein Y45G5AM.5 [Caenorhabditis elegans] 7.0E-78
blast AAY86295 Hypothetical protein Y45G5AM.4 [Caenorhabditis elegans] 7.0E-20
blast CAE58330 Hypothetical protein CBG01443 [Caenorhabditis briggsae] 3.0E-16
Sequence
Target Sequence 
>C. ELEGANS:177229_AT
ggatatcgaattgaaggctctcgttaagtctgtcgatgaaattttggatgatcactgcaa
tgaagtctggacgccagaatatctatacgctcaggaattcgattcggtattccaacaact
attcaatcaatattcacacggagaattttggcaagttgatgatcacagtgactttctcgc
gttctgccaaagagcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATATCGAATTGAAGGCTCTCGTT 433 509 18 Antisense
GAAGGCTCTCGTTAAGTCTGTCGAT 552 333 30 Antisense
GAAATTTTGGATGATCACTGCAATG 515 363 55 Antisense
TCACTGCAATGAAGTCTGGACGCCA 394 627 69 Antisense
GGACGCCAGAATATCTATACGCTCA 604 523 86 Antisense
ATACGCTCAGGAATTCGATTCGGTA 690 21 102 Antisense
GATTCGGTATTCCAACAACTATTCA 46 431 118 Antisense
GGTATTCCAACAACTATTCAATCAA 513 505 123 Antisense
TCACACGGAGAATTTTGGCAAGTTG 136 629 151 Antisense
GATGATCACAGTGACTTTCTCGCGT 359 411 175 Antisense
TTTCTCGCGTTCTGCCAAAGAGCAG 690 669 190 Antisense
Sequence Source Affymetrix Proprietary Database