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[177228_at]

Description Y61A9LA.B /REP_DB=WormBase Gene ID /WP=CE22687 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60834.1
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 72      6grp_total > 17      4grp_total > 58      6grp_highest_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 300
1 2 3 4 range
A 386.2
(-1.1)
P 		467.3
(0.8)
P 		556.8
(3)
P 		307.8
(-3)
P 		249
B 348.7
(-0.6)
P 		400.6
(0.7)
P 		487.9
(3)
P 		258.7
(-3)
P 		229
C 356.1
(-1)
P 		499.5
(1.8)
P 		557.5
(3)
P 		257.1
(-3)
P 		300
avr 363.7
(-0.9) 		455.8
(1.2) 		534.1
(3) 		274.5
(-3) 		260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 480.2
(3)
P 		408.5
(-0.1)
P 		391.2
(-0.9)
P 		396.7
(-0.6)
P 		342
(-3)
P 		388
(-1)
P 		138
B 458.6
(3)
P 		361.7
(-3)
P 		415.4
(0.3)
P 		378.6
(-2)
P 		392.5
(-1.1)
P 		412.6
(0.2)
P 		97
C 418.2
(3)
P 		414.8
(2.7)
P 		415.8
(2.8)
P 		358.7
(-3)
P 		400.4
(1.2)
P 		402
(1.4)
P 		60
avr 452.3
(3) 		395
(-1.6) 		407.5
(-0.6) 		378
(-3) 		378.3
(-3) 		400.9
(-1.2) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 140.6
(2.7)
P 		101.4
(0.4)
P 		145.6
(3)
P 		45.1
(-3)
P 		101
B 111.2
(2.8)
P 		98.9
(1.5)
P 		113.1
(3)
P 		55.1
(-3)
P 		58
C 117.9
(-0)
P 		143.6
(1)
P 		194.3
(3)
P 		43.4
(-3)
P 		151
avr 123.2
(1.4) 		114.6
(0.9) 		151
(3) 		47.9
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 88.5
(-2.7)
P 		145.3
(3)
P 		85.2
(-3)
P 		100.6
(-1.5)
P 		103.2
(-1.2)
P 		94.5
(-2.1)
P 		60
B 159.6
(3)
P 		120.4
(-1)
P 		100.9
(-2.9)
P 		100.3
(-3)
P 		159.4
(3)
P 		153.8
(2.4)
P 		59
C 155
(3)
P 		126.6
(0.9)
P 		105.8
(-0.6)
P 		72.1
(-3)
P 		129.5
(1.2)
P 		134.6
(1.5)
P 		83
avr 134.4
(3) 		130.8
(2.5) 		97.3
(-2.1) 		91
(-3) 		130.7
(2.5) 		127.6
(2.1) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177228_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19500
Sequence Type Exemplar sequence
Representative Public ID Y61A9LA.B NCBI
Target Description Y61A9LA.B /REP_DB=WormBase Gene ID /WP=CE22687 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60834.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071843(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071843 NCBI Caenorhabditis elegans Y61A9LA.11 (Y61A9LA.11) mRNA, complete cds. 11/11 None
SNAP00000010106 ENSEMBL cdna:SNAP chromosome:CEL140:V:4604901:4606727:-1 9/11 None
GENEFINDER00000010111 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4604901:4606727:-1 11/11 None
Y61A9LA.11 ENSEMBL cdna:known chromosome:CEL140:V:4604837:4606740:-1 gene:Y61A9LA.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4604900-4609136(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y61A9LA.11
Entrez Gene 178850 Entrez gene
SwissProt Q95XU5 EMBL-EBI
WormBase CE29129 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE64153 Hypothetical protein CBG08771 [Caenorhabditis briggsae] 1.0E-103
blast AAL00870 Hypothetical protein Y61A9LA.11 [Caenorhabditis elegans] ref|NP_504244.1| Y61A9LA.11 [Caenorhabditis elegans] 2.0E-97
blast AAL00870 Hypothetical protein Y61A9LA.11 [Caenorhabditis elegans] ref|NP_504244.1| Y61A9LA.11 [Caenorhabditis elegans] 2.0E-94
blast CAE64153 Hypothetical protein CBG08771 [Caenorhabditis briggsae] 1.0E-83
blast CAE64153 Hypothetical protein CBG08771 [Caenorhabditis briggsae] 2.0E-82
blast AAL00870 Hypothetical protein Y61A9LA.11 [Caenorhabditis elegans] ref|NP_504244.1| Y61A9LA.11 [Caenorhabditis elegans] 3.0E-72
Sequence
Target Sequence 
>C. ELEGANS:177228_AT
cacatcctctctatcgttggtatctttcgagaaaattgaatccgaaattgatgacgccaa
attcggaaaaaatcatcaaaaatgcttgcaggaaattgcagggtcgcttcctcatcgccg
ggctcatcactgctccatttctaagtcgtctcgagacccatttatctggaacaactgaca
gtgaattgaagaatagatgttattcgatcagatgtaacgctgagactctttcactagatc
gcgccgtcctcgtgtgcggattcatcggatggtactggcgccgattccagggagccgttg
acggtgttaacattggaattgcctacgcaatggttaatagccaatttattgctccacgca
cgtcaccagtgctcaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACATCCTCTCTATCGTTGGTATCT 298 195 980 Antisense
AGGAAATTGCAGGGTCGCTTCCTCA 465 55 1069 Antisense
TGCTCCATTTCTAAGTCGTCTCGAG 30 583 1110 Antisense
TCGTCTCGAGACCCATTTATCTGGA 356 603 1125 Antisense
GCTGAGACTCTTTCACTAGATCGCG 314 295 1198 Antisense
CCTCGTGTGCGGATTCATCGGATGG 564 267 1227 Antisense
TCGGATGGTACTGGCGCCGATTCCA 87 607 1244 Antisense
CCGATTCCAGGGAGCCGTTGACGGT 36 263 1260 Antisense
GTGTTAACATTGGAATTGCCTACGC 617 485 1283 Antisense
ATAGCCAATTTATTGCTCCACGCAC 186 23 1316 Antisense
CACGCACGTCACCAGTGCTCAAAAA 514 199 1334 Antisense
Sequence Source Affymetrix Proprietary Database