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[177226_s_at] --- /// --- /// ---

Description Y61A9LA.J /REP_DB=WormBase Gene ID /WP=CE22684 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60842.1
Cluster 6grp_total > 69      4grp_total > 03      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 59.5
(-2.3)
P 		33.7
(-3)
A 		52.6
(-2.5)
A 		258.7
(3)
P 		225
B 56.2
(-2.1)
A 		34.9
(-3)
A 		45.5
(-2.5)
A 		175
(3)
P 		140
C 48.8
(-1.7)
A 		3.2
(-3)
A 		30
(-2.2)
A 		214.5
(3)
P 		211
avr 54.8
(-2) 		23.9
(-3) 		42.7
(-2.4) 		216.1
(3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 53.4
(-1.2)
A 		66.2
(-0.5)
P 		79.8
(0.1)
P 		15.5
(-3)
A 		98.7
(1)
A 		138.8
(3)
P 		123
B 88.3
(1.3)
P 		65.8
(-0.6)
A 		41.2
(-2.7)
A 		38
(-3)
A 		85
(1)
M 		108.6
(3)
P 		71
C 88.5
(1.9)
P 		84.1
(1.5)
A 		58.9
(-0.7)
M 		34
(-3)
A 		65
(-0.2)
P 		100.1
(3)
P 		66
avr 76.7
(0.3) 		72
(-0) 		60
(-0.9) 		29.2
(-3) 		82.9
(0.7) 		115.8
(3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 21.6
(-0.2)
P 		7.3
(-3)
A 		13.7
(-1.7)
A 		37.9
(3)
P 		31
B 17.9
(-1.1)
A 		8.6
(-3)
A 		10.5
(-2.6)
A 		37.3
(3)
P 		29
C 16.1
(-0.4)
A 		0.9
(-3)
A 		10.5
(-1.4)
A 		36.2
(3)
P 		35
avr 18.5
(-0.5) 		5.6
(-3) 		11.6
(-1.9) 		37.1
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 9.8
(-1.8)
A 		23.6
(1)
P 		17.4
(-0.3)
P 		3.9
(-3)
A 		29.8
(2.2)
A 		33.8
(3)
P 		30
B 30.7
(1.1)
P 		21.9
(-0.7)
A 		10
(-3)
A 		10.1
(-3)
A 		34.5
(1.8)
M 		40.5
(3)
P 		31
C 32.8
(2.8)
P 		25.7
(1.2)
A 		15
(-1.2)
M 		6.8
(-3)
A 		21
(0.2)
P 		33.5
(3)
P 		27
avr 24.4
(0.6) 		23.7
(0.5) 		14.1
(-1.5) 		6.9
(-3) 		28.4
(1.4) 		35.9
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177226_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19544
Sequence Type Exemplar sequence
Representative Public ID Y61A9LA.J NCBI
Target Description Y61A9LA.J /REP_DB=WormBase Gene ID /WP=CE22684 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60842.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064277(11), NM_071837(11), NM_067018(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064277 NCBI Caenorhabditis elegans F49C5.3 (F49C5.3) mRNA, complete cds. 11/11 A 
NM_071837 NCBI Caenorhabditis elegans Y61A9LA.4 (Y61A9LA.4) mRNA, complete cds. 11/11 A 
NM_067018 NCBI Caenorhabditis elegans Y48A6B.8 (Y48A6B.8) mRNA, complete cds. 11/11 A 
SNAP00000035411 ENSEMBL cdna:SNAP chromosome:CEL140:II:12535663:12538502:1 11/11 None
GENEFINDER00000035422 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12536406:12538502:1 11/11 None
SNAP00000033009 ENSEMBL cdna:SNAP chromosome:CEL140:III:11027211:11028228:-1 11/11 None
GENEFINDER00000033021 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11027211:11029314:-1 11/11 None
SNAP00000010094 ENSEMBL cdna:SNAP chromosome:CEL140:V:4557798:4572349:1 11/11 None
GENEFINDER00000010114 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4560656:4561553:1 11/11 None
F49C5.3 ENSEMBL cdna:known chromosome:CEL140:II:12536406:12538502:1 gene:F49C5.3 11/11 A 
Y48A6B.8 ENSEMBL cdna:known chromosome:CEL140:III:11027153:11029314:-1 gene:Y48A6B.8 11/11 A 
Y61A9LA.4 ENSEMBL cdna:known chromosome:CEL140:V:4560656:4561497:1 gene:Y61A9LA.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12537601-12538506(+) 98.94 98.94
chrV:4560655-4561553(+) 100.0 100.0
chrIII:11027199-11028110(-) 98.79 98.79
Public Domain and Genome References
Gene Title


Ensembl F49C5.3
Y48A6B.8
Y61A9LA.4
Entrez Gene 186014 Entrez gene
190012 Entrez gene
190444 Entrez gene
SwissProt O17878 EMBL-EBI
Q9XXC9 EMBL-EBI
Q9N315 EMBL-EBI
WormBase CE37917 Wormbase
CE19191 Wormbase
CE29131 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04432 Hypothetical protein F49C5.3 [Caenorhabditis elegans] ref|NP_496678.2| F49C5.3 [Caenorhabditis elegans] 0.0
blast CAA19532 Hypothetical protein Y48A6B.8 [Caenorhabditis elegans] ref|NP_499419.1| Y48A6B.8 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177226_S_AT
tgattggaggtgatgccgtctcgcaactttcaaatttctatatggttgccttgaaaacta
tgctggagccttcttataaaatctgggcatttacttaccgaccaagctgtgttcgccgtg
ttgatagacattttcaagagcttccaccaaaagtgacaacagcgattattgaagtcgcat
tcgatattgttggagtttatttgccggttgagctgtcatacggttcgattgatatggagc
atgaattcatcaaaacgcttggagaaggagcagaacttgaggttcagcgccgtagggacg
aaagaatcacagtgttcaagaacgcagtagaagcccttggcaaagcaatgaacaatcttc
gaacatatcactttgatattgctaaaggagcactattcaactgcaataaacgatcttatt
gcgagcatcatctcaagtggggacaggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATTGGAGGTGATGCCGTCTCGCA 708 563 86 Antisense
CCGTCTCGCAACTTTCAAATTTCTA 291 265 101 Antisense
AAAACTATGCTGGAGCCTTCTTATA 174 131 139 Antisense
CTGGGCATTTACTTACCGACCAAGC 415 239 168 Antisense
AGCTGTGTTCGCCGTGTTGATAGAC 583 81 190 Antisense
GAGTTTATTTGCCGGTTGAGCTGTC 78 397 278 Antisense
GTTGAGCTGTCATACGGTTCGATTG 228 439 292 Antisense
GCAGAACTTGAGGTTCAGCGCCGTA 359 311 355 Antisense
GAACGCAGTAGAAGCCCTTGGCAAA 104 347 405 Antisense
GAACAATCTTCGAACATATCACTTT 289 353 435 Antisense
GCATCATCTCAAGTGGGGACAGGTT 503 309 510 Antisense
Sequence Source Affymetrix Proprietary Database