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[177221_at]

Description Y73B6BL.Y /REP_DB=WormBase Gene ID /WP=CE26297 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23483.1
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 21      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 71      6grp_total > 32      4grp_total > 21      6grp_highest_sub > De      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 433.1
(-3)
P 		483.3
(0.1)
P 		473.8
(-0.5)
P 		530.5
(3)
P 		97
B 389.4
(3)
P 		260.3
(-2.1)
P 		236.1
(-3)
P 		298.4
(-0.6)
P 		153
C 384.1
(0.2)
P 		325.2
(-1.1)
P 		244.9
(-3)
P 		505
(3)
P 		260
avr 402.2
(1) 		356.3
(-1.2) 		318.3
(-3) 		444.6
(3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 418
1 2 3 4 5 6 range
A 387.2
(1.4)
P 		356.2
(-0.1)
P 		341.1
(-0.9)
P 		347.2
(-0.6)
P 		418.3
(3)
P 		300
(-3)
P 		118
B 360.3
(0.9)
P 		270.4
(-2.3)
P 		419.5
(3)
P 		249.2
(-3)
P 		285.3
(-1.7)
P 		273.3
(-2.2)
P 		170
C 502.1
(1.4)
P 		475.3
(1)
P 		613.2
(3)
P 		446.1
(0.6)
P 		252.7
(-2.2)
P 		195.3
(-3)
P 		418
avr 416.5
(1.8) 		367.3
(0.3) 		457.9
(3) 		347.5
(-0.3) 		318.8
(-1.1) 		256.2
(-3) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 157.7
(3)
P 		104.9
(-1)
P 		123.9
(0.5)
P 		77.7
(-3)
P 		80
B 124.2
(3)
P 		64.3
(-2.2)
P 		54.7
(-3)
P 		63.6
(-2.2)
P 		70
C 127.1
(3)
P 		93.5
(-1.8)
P 		85.4
(-3)
P 		85.2
(-3)
P 		42
avr 136.3
(3) 		87.6
(-1.8) 		88
(-1.8) 		75.5
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 71.4
(-3)
P 		126.7
(3)
P 		74.3
(-2.7)
P 		88.1
(-1.2)
P 		126.2
(2.9)
P 		73
(-2.8)
P 		55
B 125.4
(3)
P 		90
(-0.6)
P 		101.9
(0.6)
P 		66
(-3)
P 		115.9
(2)
P 		101.9
(0.6)
P 		59
C 186.1
(3)
P 		145
(1)
P 		156.1
(1.5)
P 		89.7
(-1.8)
P 		81.8
(-2.2)
P 		65.4
(-3)
P 		121
avr 127.6
(3) 		120.6
(2.1) 		110.8
(0.9) 		81.3
(-2.8) 		108
(0.5) 		80.1
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177221_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19202
Sequence Type Exemplar sequence
Representative Public ID Y73B6BL.Y NCBI
Target Description Y73B6BL.Y /REP_DB=WormBase Gene ID /WP=CE26297 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23483.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068566
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000032039 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6334203:6334951:1 None
GENEFINDER00000032094 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6334203:6334951:1 None
Y73B6BL.30 ENSEMBL cdna:known chromosome:CEL140:IV:6334199:6335460:1 gene:Y73B6BL.30 None
NM_068566 NCBI Caenorhabditis elegans Y73B6BL.30 (Y73B6BL.30) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6328826-6334957(+) 94.5 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B6BL.30
Entrez Gene 177395 Entrez gene
SwissProt Q95XD3 EMBL-EBI
WormBase CE29005 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK95895 Hypothetical protein Y73B6BL.30 [Caenorhabditis elegans] ref|NP_500967.1| Y73B6BL.30 [Caenorhabditis elegans] 1.0E-57
blast CAE61559 Hypothetical protein CBG05468 [Caenorhabditis briggsae] 1.0E-53
blast AAI00046 Hypothetical protein LOC606665 [Danio rerio] ref|NP_001028273.1| hypothetical protein LOC606665 [Danio rerio] 6.0E-17
Sequence
Target Sequence 
>C. ELEGANS:177221_AT
gcgcgcacatttttttcatttaacaaaatatttcgtgtcgagacctggtgccgtattttt
ttcaaaaaatacattatgttttctattctctcaaacttcagtacttttgacaattttata
atcctcttattcacttccgcccgattttccagcaaaatggcggaaatcaacgagcgagcg
tctacgtcatcaccgccagttccatcgacaccggctcctgtgccacatatcagacaattg
gcagacaatatgactgacaaagttggacagttctttcaacatcaacttgagggatctatc
gaagagtataagcttctggaaacaatgaataatactacagctcaacgctatgtggatatg
aaagttgtcgcggagaaggtggctggaaaactggataatttgaatcaaaaatacgagaat
ctgcgtccatatctttcccaaattgatgctatggatgagagcacccggagattggaggaa
gctaccgctgttcttgaaaattatgttacccaactcgaatccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCGCACATTTTTTTCATTTAACA 306 285 1693 Antisense
GAGACCTGGTGCCGTATTTTTTTCA 156 393 1732 Antisense
TTCTATTCTCTCAAACTTCAGTACT 476 691 1773 Antisense
TTTATAATCCTCTTATTCACTTCCG 488 673 1807 Antisense
TCCGCCCGATTTTCCAGCAAAATGG 34 595 1828 Antisense
TCAACGAGCGAGCGTCTACGTCATC 287 631 1859 Antisense
GCTCCTGTGCCACATATCAGACAAT 374 299 1906 Antisense
CGAGAATCTGCGTCCATATCTTTCC 248 251 2106 Antisense
GGATGAGAGCACCCGGAGATTGGAG 291 513 2145 Antisense
TGGAGGAAGCTACCGCTGTTCTTGA 473 549 2165 Antisense
TTATGTTACCCAACTCGAATCCAAG 523 679 2193 Antisense
Sequence Source Affymetrix Proprietary Database