[Home] | [Total List]

[177220_at]

Description Y53G8AM.B /REP_DB=WormBase Gene ID /WP=CE25411 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59531.1
Cluster 4grp_high_8_8 > 34      6grp_total > 05      4grp_total > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 155.7
(3)
P 		146.3
(1.6)
A 		147.8
(1.8)
A 		115.9
(-3)
A 		40
B 147.8
(3)
P 		132.8
(0.3)
P 		127.5
(-0.6)
P 		114
(-3)
A 		34
C 111.8
(-3)
P 		142.6
(3)
A 		118.8
(-1.6)
A 		125.5
(-0.3)
P 		31
avr 138.4
(2.4) 		140.6
(3) 		131.4
(0.5) 		118.5
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 128.8
(1.6)
A 		125.2
(0.7)
P 		108.6
(-3)
A 		117.3
(-1)
A 		135.2
(3)
P 		132.9
(2.5)
P 		27
B 151.8
(3)
A 		103.4
(-0.6)
A 		113
(0.2)
A 		125.5
(1.1)
P 		104.9
(-0.4)
M 		70.1
(-3)
A 		82
C 159.1
(3)
P 		134.1
(1.5)
P 		92.3
(-0.9)
A 		57.3
(-3)
A 		112.2
(0.2)
P 		99.5
(-0.5)
P 		102
avr 146.6
(3) 		120.9
(-0.3) 		104.6
(-2.4) 		100
(-3) 		117.4
(-0.8) 		100.8
(-2.9) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 56.7
(3)
P 		31.7
(-0.8)
A 		38.6
(0.3)
A 		17
(-3)
A 		40
B 47.1
(3)
P 		32.8
(-0.8)
P 		29.6
(-1.6)
P 		24.3
(-3)
A 		23
C 37
(1.7)
P 		41
(2.9)
A 		41.4
(3)
A 		21.2
(-3)
P 		20
avr 46.9
(3) 		35.2
(0.3) 		36.5
(0.6) 		20.8
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 23.7
(-3)
A 		44.5
(3)
P 		23.7
(-3)
A 		29.8
(-1.2)
A 		40.8
(1.9)
P 		32.4
(-0.5)
P 		21
B 52.8
(3)
A 		34.4
(-1.1)
A 		27.4
(-2.7)
A 		33.2
(-1.4)
P 		42.6
(0.7)
M 		26.1
(-3)
A 		27
C 59
(3)
P 		40.9
(0.7)
P 		23.5
(-1.5)
A 		11.5
(-3)
A 		36.3
(0.1)
P 		33.3
(-0.2)
P 		48
avr 45.2
(3) 		39.9
(1.4) 		24.9
(-3) 		24.8
(-3) 		39.9
(1.4) 		30.6
(-1.3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177220_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18938
Sequence Type Exemplar sequence
Representative Public ID Y53G8AM.B NCBI
Target Description Y53G8AM.B /REP_DB=WormBase Gene ID /WP=CE25411 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59531.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065281(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065281 NCBI Caenorhabditis elegans Y53G8AM.8 (Y53G8AM.8) mRNA, complete cds. 11/11 A 
GENEFINDER00000032330 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3267241:3275248:-1 11/11 None
SNAP00000032324 ENSEMBL cdna:SNAP chromosome:CEL140:III:3273414:3276097:-1 11/11 None
Y53G8AM.8.2 ENSEMBL cdna:known chromosome:CEL140:III:3267167:3278687:-1 gene:Y53G8AM.8 11/11 A 
Y53G8AM.8.1 ENSEMBL cdna:known chromosome:CEL140:III:3267185:3278687:-1 gene:Y53G8AM.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3274126-3276130(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53G8AM.8
Entrez Gene 175430 Entrez gene
SwissProt Q9BL70 EMBL-EBI
WormBase CE27282 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29931 Hypothetical protein Y53G8AM.8 [Caenorhabditis elegans] ref|NP_497682.1| Y53G8AM.8 [Caenorhabditis elegans] 0.0
blast CAE69478 Hypothetical protein CBG15679 [Caenorhabditis briggsae] 1.0E-147
blast CAE69478 Hypothetical protein CBG15679 [Caenorhabditis briggsae] 1.0E-129
blast CAE69478 Hypothetical protein CBG15679 [Caenorhabditis briggsae] 2.0E-56
Protein Domains
Database ID Description E-Value
scop a.4.1.Centromere-binding All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding 2.00000002337219E-7
Sequence
Target Sequence 
>C. ELEGANS:177220_AT
gtccttggatccttcaatagccagcagcccatcgatccaacaccatcgaagactctaaag
gatgttctgggctctctggacttggataatgactatgatctcaagctcaagatggaaggt
cttgaccacgatctgaaggtcgagtcgcctacggacgccgagctaggcctcgatgagttc
gcaaatcagattctttcttcaaagtacaagggaacctctctggacaccgatcacactgcc
tatccgggaaaccacctcccgtggccggttctttggaagaaccctgtcccaaagtatatt
caaggggagatctattgctatgtggatggttgtacctattctccgatgagcgagatcata
aaatccggcaaattcatggttcctctcgatcatccggttgagttcattttcaaggatcgc
ccgatcctcgtgactatggaagagttgctcaccgcaaatgggattaatatgagcaaagcg
cagcactatcgaatgcttcagggattgctgcagaagtctggtgtgcatattcgggcggac
tacgcggagagactgcacgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCTTGGATCCTTCAATAGCCAGC 46 477 721 Antisense
TAAAGGATGTTCTGGGCTCTCTGGA 613 639 776 Antisense
TCTGAAGGTCGAGTCGCCTACGGAC 508 607 852 Antisense
GTACAAGGGAACCTCTCTGGACACC 458 461 924 Antisense
GAAGAACCCTGTCCCAAAGTATATT 10 339 996 Antisense
ATGGTTGTACCTATTCTCCGATGAG 670 51 1046 Antisense
AATCCGGCAAATTCATGGTTCCTCT 93 167 1082 Antisense
TCCTCTCGATCATCCGGTTGAGTTC 350 591 1101 Antisense
GAGTTCATTTTCAAGGATCGCCCGA 638 397 1120 Antisense
TGGTGTGCATATTCGGGCGGACTAC 237 553 1239 Antisense
GGACTACGCGGAGAGACTGCACGAG 391 523 1257 Antisense
Sequence Source Affymetrix Proprietary Database