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[177217_at] 7TM chemoreceptor, srv family

Description Y73B6BL.S /REP_DB=WormBase Gene ID /WP=CE26291 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23477.1
Cluster 6grp_total > 12      4grp_total > 04      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 85.2
(-1.5)
P 		56.1
(-2.8)
A 		51.4
(-3)
A 		189.8
(3)
P 		138
B 87.7
(1.5)
P 		71.2
(-1.1)
A 		97
(3)
P 		58.9
(-3)
A 		38
C 93.4
(-1.4)
P 		74.7
(-2)
A 		42
(-3)
A 		234.3
(3)
P 		192
avr 88.8
(-1.4) 		67.3
(-2.8) 		63.5
(-3) 		161
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 96.4
(0.6)
A 		58.5
(-1.6)
M 		139.8
(3)
P 		75.4
(-0.6)
M 		46.9
(-2.2)
A 		33.3
(-3)
P 		107
B 71.2
(0.2)
P 		108.2
(3)
P 		76.9
(0.6)
P 		28.9
(-3)
A 		57.7
(-0.8)
A 		36.8
(-2.4)
A 		79
C 91.5
(-0.1)
P 		162.6
(3)
P 		41.4
(-2.2)
A 		60.7
(-1.4)
A 		23.5
(-3)
A 		25.8
(-2.9)
A 		139
avr 86.4
(1.2) 		109.8
(3) 		86
(1.2) 		55
(-1.2) 		42.7
(-2.2) 		32
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 31
(3)
P 		12.2
(-3)
A 		13.4
(-2.6)
A 		27.8
(2)
P 		19
B 28
(3)
P 		17.6
(-1.1)
A 		22.5
(0.9)
P 		12.6
(-3)
A 		15
C 30.9
(0.9)
P 		21.5
(-1.3)
A 		14.6
(-3)
A 		39.5
(3)
P 		25
avr 30
(3) 		17.1
(-2.9) 		16.8
(-3) 		26.6
(1.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 17.8
(-0.4)
A 		20.8
(0.4)
M 		30.4
(3)
P 		19.1
(-0)
M 		14.2
(-1.4)
A 		8.1
(-3)
P 		22
B 24.8
(0.6)
P 		36
(3)
P 		18.7
(-0.7)
P 		7.7
(-3)
A 		23.4
(0.3)
A 		13.7
(-1.7)
A 		28
C 33.9
(0.8)
P 		49.6
(3)
P 		10.5
(-2.6)
A 		12.2
(-2.3)
A 		7.6
(-3)
A 		8.6
(-2.9)
A 		42
avr 25.5
(0.6) 		35.5
(3) 		19.9
(-0.7) 		13
(-2.3) 		15.1
(-1.8) 		10.1
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177217_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19228
Sequence Type Exemplar sequence
Representative Public ID Y73B6BL.S NCBI
Target Description Y73B6BL.S /REP_DB=WormBase Gene ID /WP=CE26291 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23477.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068558(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068558 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-27) (srv-27) mRNA, complete cds. 11/11 None
SNAP00000032027 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6296263:6297493:-1 9/11 None
GENEFINDER00000032078 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6296263:6298331:-1 11/11 None
Y73B6BL.41 ENSEMBL cdna:known chromosome:CEL140:IV:6296263:6298331:-1 gene:Y73B6BL.41 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6296268-6304123(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srv family
Gene Symbol srv-27
Ensembl Y73B6BL.41
Entrez Gene 190647 Entrez gene
SwissProt Q86DM2 EMBL-EBI
WormBase CE33489 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO38575 Serpentine receptor, class v protein 27 [Caenorhabditis elegans] ref|NP_500959.2| Serpentine Receptor, class V family member (srv-27) [Caenorhabditis elegans] 1.0E-162
blast AAO38575 Serpentine receptor, class v protein 27 [Caenorhabditis elegans] ref|NP_500959.2| Serpentine Receptor, class V family member (srv-27) [Caenorhabditis elegans] 1.0E-118
blast CAE61565 Hypothetical protein CBG05475 [Caenorhabditis briggsae] 1.0E-104
blast AAO38574 Serpentine receptor, class v protein 26 [Caenorhabditis elegans] ref|NP_872113.1| Serpentine Receptor, class V family member (srv-26) [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 3.4E-123
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 7.1E-84
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 7.3E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500959.2 7 15-34,47-69,89-111,132-154,183-205,226-243,258-280
Y73B6BL.41 7 15-34,47-69,89-111,132-154,183-205,226-243,258-280
SNAP00000032027 3 28-50,122-144,173-195
GENEFINDER00000032078 7 15-34,47-69,89-111,132-154,183-205,226-243,258-280
Sequence
Target Sequence 
>C. ELEGANS:177217_AT
ggtttactggataccacctacacttctgaatatcgtagttcttaaagatacaaacttcca
ttttgatggattggaagatatggcgattgttgcggagaaaactgttattcagagaaatac
tttaatggcattgattgtggtcagcatcacatgtattgtaagctcaggtgcctatggagc
tctattttcatttgttagaaagaactcatcgagactgtcaaaatcccttcgtcgagaagt
tcatttggcatttcaagtcttagtgcttctctttgcatttttccttatccttgtttttta
tacatttcttaattatttttctagaacccaaaataatggtccaatattttacatgcgtgg
tctttatccaatggcaaatggtttcctgtcctacattaacccgttttgcatactattttt
gaacaaagaactgactcgaaaaatgataaaaccaatttcttgccgtggagatcttatgag
tgaagttcaaatttctggaattgctaccaactcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTACTGGATACCACCTACACTT 564 505 2253 Antisense
ATACCACCTACACTTCTGAATATCG 660 21 2263 Antisense
AATGGCATTGATTGTGGTCAGCATC 90 163 2376 Antisense
CTCAGGTGCCTATGGAGCTCTATTT 363 229 2415 Antisense
AGACTGTCAAAATCCCTTCGTCGAG 467 67 2464 Antisense
AAGTCTTAGTGCTTCTCTTTGCATT 51 159 2507 Antisense
TTCCTTATCCTTGTTTTTTATACAT 672 697 2533 Antisense
ACATGCGTGGTCTTTATCCAATGGC 443 105 2603 Antisense
CTGTCCTACATTAACCCGTTTTGCA 230 239 2638 Antisense
ACCAATTTCTTGCCGTGGAGATCTT 80 85 2703 Antisense
ATTTCTGGAATTGCTACCAACTCAA 108 15 2743 Antisense
Sequence Source Affymetrix Proprietary Database