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[177216_at]

Description Y53G8AM.G /REP_DB=WormBase Gene ID /WP=CE25416 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59536.1
Cluster 6grp_total > 03      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3
(-2.8)
A 		2.9
(-3)
A 		4.4
(-0.6)
A 		6.6
(3)
A 		4
B 10
(3)
A 		3.1
(-2)
A 		4.2
(-1.2)
A 		1.7
(-3)
A 		8
C 2.8
(-2.9)
A 		2.7
(-3)
A 		4
(-1.3)
A 		7.3
(3)
A 		5
avr 5.3
(3) 		2.9
(-3) 		4.2
(0.3) 		5.2
(2.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 6.2
(0.4)
A 		4.4
(-1)
A 		5.9
(0.2)
A 		2
(-2.8)
A 		9.7
(3)
A 		1.7
(-3)
A 		8
B 26.8
(3)
A 		5.1
(-2.4)
A 		2.5
(-3)
A 		4
(-2.6)
A 		2.5
(-3)
A 		6.3
(-2.1)
A 		24
C 2.6
(-2.7)
A 		19.1
(1)
A 		9.5
(-1.2)
A 		27.6
(3)
A 		1.9
(-2.9)
A 		1.5
(-3)
A 		26
avr 11.9
(3) 		9.5
(1.3) 		6
(-1.1) 		11.2
(2.5) 		4.7
(-2) 		3.2
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.1
(2)
A 		0.6
(-3)
A 		1.2
(3)
A 		1
(1)
A 		1
B 3.2
(3)
A 		0.8
(-2.1)
A 		1
(-1.7)
A 		0.4
(-3)
A 		3
C 0.9
(-2)
A 		0.8
(-3)
A 		1.4
(3)
A 		1.2
(1)
A 		1
avr 1.7
(3) 		0.7
(-3) 		1.2
(0) 		0.9
(-1.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.1
(-1.3)
A 		1.6
(-0.1)
A 		1.3
(-0.8)
A 		0.5
(-2.8)
A 		2.9
(3)
A 		0.4
(-3)
A 		3
B 9.3
(3)
A 		1.7
(-2.2)
A 		0.6
(-3)
A 		1.1
(-2.7)
A 		1
(-2.7)
A 		2.4
(-1.8)
A 		9
C 1
(-2.4)
A 		5.8
(3)
A 		2.4
(-0.8)
A 		5.6
(2.8)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		5
avr 3.8
(3) 		3
(1.2) 		1.4
(-2.3) 		2.4
(-0.1) 		1.5
(-2.1) 		1.1
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177216_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18955
Sequence Type Exemplar sequence
Representative Public ID Y53G8AM.G NCBI
Target Description Y53G8AM.G /REP_DB=WormBase Gene ID /WP=CE25416 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59536.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065276(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065276 NCBI Caenorhabditis elegans Y53G8AM.4 (Y53G8AM.4) mRNA, complete cds. 11/11 None
Y53G8AM.4 ENSEMBL cdna:known chromosome:CEL140:III:3254015:3255608:-1 gene:Y53G8AM.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3254014-3255608(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53G8AM.4
Entrez Gene 190236 Entrez gene
SwissProt Q9N3H1 EMBL-EBI
WormBase CE25416 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29927 Hypothetical protein Y53G8AM.4 [Caenorhabditis elegans] ref|NP_497677.1| Y53G8AM.4 [Caenorhabditis elegans] 1.0E-174
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497677.1 6 9-31,41-62,75-94,99-121,141-163,169-191
Y53G8AM.4 6 9-31,41-62,75-94,99-121,141-163,169-191
Sequence
Target Sequence 
>C. ELEGANS:177216_AT
ggtgcatcgattttctacatcttatttgtcgccctgaactgtgtatcctcaattctacaa
ttcggctgcttccacgtatacatcacaagttacaagtaccacaaataccgtgcttttttt
cgtggctggtttgttccaatacttaactgtttgaatttcgtcctggcgctaatatttctg
atcaatttgaattttaacgtaatctctttttatatggtcaattctcttattttctacttg
gctattactttttccctactatttttcaagaaaatattttacgcctggaaaaggtttaaa
caaggatcccttgcgtcggagttcttcaataagtatatgaatttcaagctgcccaatatt
ttcctagatggagtacctactgaaacttgcggagcctactgtcgcatctgtcttaagaag
tactcagaaaacgacaccaaaagtgtgcctcgcttcttgtttgcatgcggccacacgtat
tgcgatgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCATCGATTTTCTACATCTTAT 410 501 319 Antisense
TTATTTGTCGCCCTGAACTGTGTAT 367 677 340 Antisense
CACAAATACCGTGCTTTTTTTCGTG 150 193 418 Antisense
GAATTTCGTCCTGGCGCTAATATTT 625 325 471 Antisense
AATTCTCTTATTTTCTACTTGGCTA 443 177 538 Antisense
TCTACTTGGCTATTACTTTTTCCCT 180 609 551 Antisense
CAAGCTGCCCAATATTTTCCTAGAT 65 187 663 Antisense
CTGAAACTTGCGGAGCCTACTGTCG 533 237 698 Antisense
CCTACTGTCGCATCTGTCTTAAGAA 362 269 713 Antisense
GACACCAAAAGTGTGCCTCGCTTCT 236 365 751 Antisense
ATGCGGCCACACGTATTGCGATGAA 250 43 783 Antisense
Sequence Source Affymetrix Proprietary Database