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[177213_at]

Description Y53G8AM.J /REP_DB=WormBase Gene ID /WP=CE25418 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59539.1
Cluster 6grp_total > 0      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 3.6
(-3)
A 		8.2
(-1.9)
A 		17.4
(0.4)
A 		28.1
(3)
A 		25
B 33.3
(0.3)
A 		2.7
(-3)
A 		34.2
(0.4)
A 		58
(3)
A 		55
C 7.8
(-3)
A 		47.2
(3)
A 		21.1
(-1)
A 		38.4
(1.7)
A 		39
avr 14.9
(-3) 		19.4
(-2) 		24.2
(-0.9) 		41.5
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 16.5
(-1.9)
A 		51.1
(2)
A 		21.4
(-1.4)
A 		7
(-3)
A 		59.7
(3)
A 		19.5
(-1.6)
A 		53
B 33.9
(-1.4)
A 		44.4
(-0.3)
A 		77.6
(3)
M 		45.3
(-0.2)
A 		30.4
(-1.7)
A 		17.9
(-3)
A 		60
C 38.1
(1.2)
A 		48
(2.5)
P 		6.2
(-3)
A 		29.6
(0.1)
A 		13
(-2.1)
A 		52.1
(3)
P 		46
avr 29.5
(-2.4) 		47.8
(3) 		35.1
(-0.7) 		27.3
(-3) 		34.4
(-0.9) 		29.8
(-2.3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.3
(-3)
A 		1.8
(-2.1)
A 		4.5
(3)
A 		4.1
(2.3)
A 		3
B 10.6
(2.1)
A 		0.7
(-3)
A 		7.9
(0.7)
A 		12.4
(3)
A 		12
C 2.6
(-3)
A 		13.6
(3)
A 		7.4
(-0.4)
A 		6.5
(-0.9)
A 		11
avr 4.8
(-3) 		5.4
(-1.8) 		6.6
(0.7) 		7.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3
(-2.6)
A 		18.2
(3)
A 		4.7
(-1.9)
A 		1.8
(-3)
A 		18
(2.9)
A 		4.8
(-1.9)
A 		16
B 11.8
(-0.5)
A 		14.8
(1)
A 		18.8
(3)
M 		12
(-0.4)
A 		12.4
(-0.2)
A 		6.7
(-3)
A 		12
C 14.1
(1.7)
A 		14.7
(2)
P 		1.6
(-3)
A 		6
(-1.3)
A 		4.2
(-2)
A 		17.4
(3)
P 		16
avr 9.6
(-1.1) 		15.9
(3) 		8.4
(-1.8) 		6.6
(-3) 		11.5
(0.2) 		9.6
(-1.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177213_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18904
Sequence Type Exemplar sequence
Representative Public ID Y53G8AM.J NCBI
Target Description Y53G8AM.J /REP_DB=WormBase Gene ID /WP=CE25418 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59539.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000032325 ENSEMBL cdna:SNAP chromosome:CEL140:III:3273517:3277474:1 11/11 None
GENEFINDER00000032326 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3276145:3277182:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69023 Hypothetical protein T25G12.9 [Caenorhabditis elegans] 1.0E-157
blast AAC69023 Hypothetical protein T25G12.9 [Caenorhabditis elegans] 1.0E-156
blast T32681 hypothetical protein K07C6.14 - Caenorhabditis elegans 1.0E-135
blast AAA82401 Hypothetical protein T02G5.5 [Caenorhabditis elegans] 1.0E-115
Protein Domains
Database ID Description E-Value
scop a.4.1.Recombinase DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Recombinase DNA-binding domain 1.0000000458137E-18
scop a.4.1.Recombinase DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Recombinase DNA-binding domain 7.99999974612418E-19
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 4.19999980926514
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 8.5E-5
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 5.0E-38
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 8.5E-5
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 5.0E-38
Sequence
Target Sequence 
>C. ELEGANS:177213_AT
atggaccaagattgttttctccggcgagaagaaattcaacctggatggtccagatggcaa
tcgatactactggagagatctgagaaaggatccgttaatcttttctaagcgaaattttgg
aggtggatcggtaatggtgtgggcagcgttttcggagaaaaaaaagctgccaatccaatt
tacaagtcataagatgaatgcagttgattatcagaaagttttggaccaagaccttgtcaa
gtttatgcgacatccgtcaaagaaaggctggatgttccaacaagacaacgcgagtattca
cagtgccgcttcaacccgtgcttttctcgacagcaaaaagatcaaattgttgaagtggcc
agcttgttcaccggatctcaatccaatcgagaacttatgggcatcgcttgtcagaattgt
ctacgctaatggaaaacagtatccaaatgtggctgcactaaaacttggtattgaggatgc
ttggaaagaaatctccgcagccgaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGACCAAGATTGTTTTCTCCGGC 145 51 420 Antisense
GGTCCAGATGGCAATCGATACTACT 95 503 466 Antisense
GGATCCGTTAATCTTTTCTAAGCGA 40 499 507 Antisense
GTAATGGTGTGGGCAGCGTTTTCGG 313 463 550 Antisense
AAAGCTGCCAATCCAATTTACAAGT 647 123 582 Antisense
GTCAAGTTTATGCGACATCCGTCAA 61 465 655 Antisense
ACGCGAGTATTCACAGTGCCGCTTC 243 89 707 Antisense
CCCGTGCTTTTCTCGACAGCAAAAA 154 261 734 Antisense
GAGAACTTATGGGCATCGCTTGTCA 202 393 808 Antisense
ATCGCTTGTCAGAATTGTCTACGCT 576 37 822 Antisense
GAAAGAAATCTCCGCAGCCGAAATG 482 359 903 Antisense
Sequence Source Affymetrix Proprietary Database