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[177210_at]

Description Y53G8AM.E /REP_DB=WormBase Gene ID /WP=CE25414 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59534.1
Cluster 6grp_total > 10      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 46
(3)
A 		19
(-1)
A 		5.4
(-3)
A 		44
(2.7)
A 		41
B 24.1
(0.2)
A 		36.5
(3)
A 		10
(-3)
A 		20.8
(-0.6)
A 		27
C 29.1
(0.8)
P 		10.4
(-2.6)
A 		8.4
(-3)
A 		41.4
(3)
P 		33
avr 33.1
(2.5) 		22
(0.1) 		7.9
(-3) 		35.4
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 8.6
(-2.5)
A 		24.2
(-0.4)
A 		48.9
(3)
P 		4.8
(-3)
A 		8.4
(-2.5)
A 		19.7
(-1)
A 		44
B 19.6
(-0.5)
A 		32.8
(3)
A 		16.4
(-1.4)
A 		10.4
(-3)
A 		25.1
(0.9)
P 		19.7
(-0.5)
A 		22
C 7.4
(-3)
A 		54.5
(1.6)
M 		12.4
(-2.5)
A 		68.4
(3)
P 		32
(-0.6)
A 		25.6
(-1.2)
A 		61
avr 11.9
(-3) 		37.2
(3) 		25.9
(0.3) 		27.9
(0.8) 		21.8
(-0.7) 		21.7
(-0.7) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.8
(3)
A 		4.1
(-1.9)
A 		1.4
(-3)
A 		6.4
(-1.1)
A 		15
B 7.7
(1.8)
A 		9
(3)
A 		2.3
(-3)
A 		4.4
(-1.1)
A 		7
C 9.6
(3)
P 		3
(-2.9)
A 		2.9
(-3)
A 		7
(0.7)
P 		7
avr 11.4
(3) 		5.4
(-0.9) 		2.2
(-3) 		5.9
(-0.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.6
(-2.7)
A 		8.6
(1.7)
A 		10.6
(3)
P 		1.2
(-3)
A 		2.5
(-2.2)
A 		4.8
(-0.7)
A 		9
B 6.8
(-0)
A 		10.9
(3)
A 		4
(-2.1)
A 		2.8
(-3)
A 		10.2
(2.5)
P 		7.3
(0.3)
A 		8
C 2.8
(-3)
A 		16.6
(3)
M 		3.2
(-2.8)
A 		13.8
(1.8)
P 		10.3
(0.3)
A 		8.6
(-0.5)
A 		14
avr 3.7
(-3) 		12
(3) 		5.9
(-1.4) 		5.9
(-1.4) 		7.7
(-0.1) 		6.9
(-0.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177210_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18963
Sequence Type Exemplar sequence
Representative Public ID Y53G8AM.E NCBI
Target Description Y53G8AM.E /REP_DB=WormBase Gene ID /WP=CE25414 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59534.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065278(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065278 NCBI Caenorhabditis elegans Y53G8AM.6 (Y53G8AM.6) mRNA, complete cds. 11/11 None
Y53G8AM.6 ENSEMBL cdna:known chromosome:CEL140:III:3259320:3260871:-1 gene:Y53G8AM.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3259319-3260871(-) 86.23 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53G8AM.6
Entrez Gene 190238 Entrez gene
SwissProt Q9N3G9 EMBL-EBI
WormBase CE25414 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29925 Hypothetical protein Y53G8AM.6 [Caenorhabditis elegans] ref|NP_497679.1| Y53G8AM.6 [Caenorhabditis elegans] 1.0E-105
Sequence
Target Sequence 
>C. ELEGANS:177210_AT
ggagccgttaaattcctttctatcgttctactctttgtggattttacctgctatgcaatt
gctggatcaaagattgcagcaaacatgtcgcaaaacgagcttgaccaggagttgaacgga
catttttcagatctcgcttcttttcaggtttcaattgaggtttgtgtgcggattttgcta
agtttagtacacaatgtattcgttcatgcttcctattataacgttttcaactttgaaaat
ctagtttctttcgataaactactgccggctgagaaggatttggaaaagtttgtagagaag
atcactgggcccttctttctttgtgctggctggtttttagttgacattatgttcactgat
tcattacaaaaaacaattggatgtcgatataagtgtgaggagaatgacgcaattaattgt
aaaaatgataccttaaagtgtttttttagtccatattaccccgctgctggttggctcagc
aacataaccaccggacttcctggatcagcttgtgactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCCGTTAAATTCCTTTCTATCG 541 521 16 Antisense
CTTTCTATCGTTCTACTCTTTGTGG 129 223 31 Antisense
TGTGGATTTTACCTGCTATGCAATT 204 553 51 Antisense
GAGGTTTGTGTGCGGATTTTGCTAA 166 403 172 Antisense
AATGTATTCGTTCATGCTTCCTATT 689 163 208 Antisense
TTCTTTCGATAAACTACTGCCGGCT 620 687 261 Antisense
AGAGAAGATCACTGGGCCCTTCTTT 221 67 309 Antisense
TTCTTTCTTTGTGCTGGCTGGTTTT 36 691 328 Antisense
CCGCTGCTGGTTGGCTCAGCAACAT 274 263 476 Antisense
CTCAGCAACATAACCACCGGACTTC 508 225 490 Antisense
GACTTCCTGGATCAGCTTGTGACTC 427 371 509 Antisense
Sequence Source Affymetrix Proprietary Database