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[177207_at]

Description Y71H2AL.G /REP_DB=WormBase Gene ID /WP=CE22931 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60876.1
Cluster 6grp_total > 11      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 8.4
(-3)
A 		44.3
(2.5)
A 		47.3
(3)
A 		14.8
(-2)
A 		39
B 4.5
(-3)
A 		50.6
(3)
A 		36.5
(1.2)
A 		9.7
(-2.3)
A 		46
C 6.9
(-3)
A 		9
(-2.8)
A 		13.1
(-2.4)
A 		69.8
(3)
M 		63
avr 6.6
(-3) 		34.6
(3) 		32.3
(2.5) 		31.4
(2.3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 14.5
(0.8)
A 		2.7
(-2.8)
A 		2.1
(-3)
A 		15.4
(1.1)
A 		3.3
(-2.6)
A 		21.6
(3)
A 		20
B 13.9
(-1.2)
A 		38.8
(3)
A 		8.6
(-2.1)
A 		3.6
(-3)
A 		7.7
(-2.3)
A 		4.7
(-2.8)
A 		35
C 6.8
(-3)
A 		11.6
(-1.9)
A 		33.6
(3)
A 		10.6
(-2.1)
A 		32.7
(2.8)
A 		6.6
(-3)
A 		27
avr 11.7
(-1.6) 		17.7
(3) 		14.8
(0.8) 		9.9
(-3) 		14.6
(0.6) 		11
(-2.2) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.1
(-2.5)
A 		9.6
(1.4)
A 		12.4
(3)
A 		2.2
(-3)
A 		10
B 1.4
(-3)
A 		12.5
(3)
A 		8.5
(0.8)
A 		2.1
(-2.6)
A 		11
C 2.3
(-3)
A 		2.6
(-2.8)
A 		4.6
(-1.5)
A 		11.8
(3)
M 		10
avr 2.3
(-3) 		8.2
(2.7) 		8.5
(3) 		5.4
(0) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.7
(-0.3)
A 		0.9
(-2.5)
A 		0.5
(-3)
A 		3.9
(1.3)
A 		1
(-2.4)
A 		5.3
(3)
A 		5
B 4.8
(-1.1)
A 		12.9
(3)
A 		2.1
(-2.4)
A 		1
(-3)
A 		3.1
(-1.9)
A 		1.8
(-2.6)
A 		12
C 2.5
(-2.7)
A 		3.5
(-2)
A 		8.6
(1.6)
A 		2.1
(-3)
A 		10.6
(3)
A 		2.2
(-2.9)
A 		9
avr 3.3
(-1.3) 		5.8
(3) 		3.7
(-0.6) 		2.3
(-3) 		4.9
(1.5) 		3.1
(-1.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177207_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18951
Sequence Type Exemplar sequence
Representative Public ID Y71H2AL.G NCBI
Target Description Y71H2AL.G /REP_DB=WormBase Gene ID /WP=CE22931 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60876.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065201(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065201 NCBI Caenorhabditis elegans Y71H2AL.2 (Y71H2AL.2) mRNA, complete cds. 11/11 None
Y71H2AL.2 ENSEMBL cdna:known chromosome:CEL140:III:2684534:2688987:1 gene:Y71H2AL.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036790 2/11 Cross Hyb Matching Probes None
GENEFINDER00000036791 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2684533-2688987(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71H2AL.2
Entrez Gene 190604 Entrez gene
SwissProt Q9N2Y0 EMBL-EBI
WormBase CE22931 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60876 Hypothetical protein Y71H2AL.2 [Caenorhabditis elegans] ref|NP_497602.1| Y71H2AL.2 [Caenorhabditis elegans] 2.0E-98
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497602.1 2 102-124,186-208
Y71H2AL.2 2 102-124,186-208
Sequence
Target Sequence 
>C. ELEGANS:177207_AT
gatgctcctatgatgcaccatgtttgcacgccaaatctggtgcataggctccacgtaccc
aatacatcatatttaacgcgcaaattggcaacgctaagccgagctaagcccagtcgccga
ataaaaaaacgtattgagcaaaagcagcagcagcaggagccaaaaatattgtctgttcat
ttcttcgtttccctccctccgttcaggcagagagttatcctcatcttcttctcttttttc
ttctttactctatcatattattccgaccagattgttggcggcggctgttcattctctttt
tattcctatttctctcattacatatatttccccccactcccactattatcttcatattct
tccaaaatgccacgtaactgctatccattatgcgcagagaaacgagattttatggagcac
aatcctgcgcaaaatgggacagatttctatcgagaatacgatccgatggtcggcatcggc
accgccgccgttttagcgttatttttcttcacaattacgataaatgggtgtattcgatgc
gcggttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCTCCTATGATGCACCATGTTT 449 413 103 Antisense
CACCATGTTTGCACGCCAAATCTGG 656 201 118 Antisense
AAATCTGGTGCATAGGCTCCACGTA 117 117 135 Antisense
TATTGTCTGTTCATTTCTTCGTTTC 73 667 269 Antisense
GGCAGAGAGTTATCCTCATCTTCTT 546 535 308 Antisense
CTTTTTTCTTCTTTACTCTATCATA 307 223 335 Antisense
GGCTGTTCATTCTCTTTTTATTCCT 219 537 385 Antisense
TTCTCTCATTACATATATTTCCCCC 269 693 412 Antisense
CACTCCCACTATTATCTTCATATTC 175 199 437 Antisense
GCCACGTAACTGCTATCCATTATGC 512 279 471 Antisense
AATGGGTGTATTCGATGCGCGGTTC 351 163 625 Antisense
Sequence Source Affymetrix Proprietary Database