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[177206_at]

Description Y46C8AL.G /REP_DB=WormBase Gene ID /WP=CE21955 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60601.1
Cluster 6grp_total > 54      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 18.8
(0)
A 		35.1
(3)
A 		2.3
(-3)
A 		5
(-2.5)
A 		33
B 39.2
(3)
A 		13.5
(-1.2)
A 		4.5
(-2.7)
A 		2.6
(-3)
A 		37
C 10.9
(-3)
A 		23
(-1.6)
A 		14.5
(-2.6)
A 		62.6
(3)
P 		52
avr 23
(2.7) 		23.9
(3) 		7.1
(-3) 		23.4
(2.8) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 31.4
(3)
A 		2.5
(-3)
A 		11.2
(-1.2)
A 		3.8
(-2.7)
A 		2.4
(-3)
A 		22.1
(1.1)
A 		29
B 2.3
(-2.8)
A 		9.5
(-1.6)
A 		37.3
(3)
A 		0.8
(-3)
A 		22.8
(0.6)
A 		14.1
(-0.8)
A 		37
C 1.4
(-2.9)
A 		20.7
(3)
A 		13.9
(0.9)
A 		6.3
(-1.4)
A 		1.2
(-3)
A 		8.1
(-0.9)
A 		20
avr 11.7
(-0.2) 		10.9
(-0.5) 		20.8
(3) 		3.6
(-3) 		8.8
(-1.2) 		14.8
(0.9) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.8
(2.3)
A 		7.6
(3)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		7
B 12.5
(3)
A 		3.3
(-1.6)
A 		1
(-2.8)
A 		0.6
(-3)
A 		12
C 3.6
(-3)
A 		6.6
(-0.4)
A 		5.1
(-1.7)
A 		10.6
(3)
P 		7
avr 7.6
(3) 		5.8
(1) 		2.2
(-3) 		4
(-1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 5.8
(3)
A 		0.9
(-2.8)
A 		2.4
(-1)
A 		1
(-2.6)
A 		0.7
(-3)
A 		5.4
(2.5)
A 		5
B 0.8
(-2.6)
A 		3.2
(-1)
A 		9.1
(2.9)
A 		0.2
(-3)
A 		9.2
(3)
A 		5.2
(0.3)
A 		9
C 0.5
(-2.9)
A 		6.3
(3)
A 		3.5
(0.2)
A 		1.3
(-2.1)
A 		0.4
(-3)
A 		2.7
(-0.7)
A 		6
avr 2.4
(-0.7) 		3.5
(0.9) 		5
(3) 		0.8
(-3) 		3.4
(0.7) 		4.4
(2.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177206_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19253
Sequence Type Exemplar sequence
Representative Public ID Y46C8AL.G NCBI
Target Description Y46C8AL.G /REP_DB=WormBase Gene ID /WP=CE21955 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60601.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000030676 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3941550:3943694:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3941567-3941900(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:177206_AT
gagcatcatcgtaagtcattttttgggccacaaatttgaaacacaatcctttgatttcca
agtcattaccgactgggcaaacggcgctgaccaagccaaaaagtgttgcgaagagaaaat
caatgtaaatgtagaaggtgagcctgtgagcttgataatatacttatatactggcggggc
agtgacgtcaggtaatctagcatgtgtagagaggcaaaatcataacatcggaaacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCATCATCGTAAGTCATTTTTTG 459 389 15 Antisense
TCGTAAGTCATTTTTTGGGCCACAA 144 601 23 Antisense
GAAACACAATCCTTTGATTTCCAAG 216 355 52 Antisense
GATTTCCAAGTCATTACCGACTGGG 152 419 67 Antisense
TACCGACTGGGCAAACGGCGCTGAC 366 647 81 Antisense
AACGGCGCTGACCAAGCCAAAAAGT 566 143 94 Antisense
GAAGGTGAGCCTGTGAGCTTGATAA 464 335 148 Antisense
ATATACTTATATACTGGCGGGGCAG 515 13 172 Antisense
CTGGCGGGGCAGTGACGTCAGGTAA 326 237 185 Antisense
GACGTCAGGTAATCTAGCATGTGTA 329 377 198 Antisense
GGCAAAATCATAACATCGGAAACGC 482 525 227 Antisense
Sequence Source Affymetrix Proprietary Database