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[177203_s_at]

Description Y48G8AR.C /REP_DB=WormBase Gene ID /WP=CE22201 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60705.1
Cluster 6grp_total > 17      4grp_total > 30      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 162.6
(3)
P 		65.2
(-1.8)
A 		39.9
(-3)
A 		115.7
(0.7)
A 		123
B 133.8
(3)
P 		76.4
(-1.4)
A 		56.3
(-3)
A 		121.6
(2.1)
P 		78
C 118.5
(3)
P 		64.1
(-1.5)
A 		46.1
(-3)
A 		106.2
(2)
A 		72
avr 138.3
(3) 		68.6
(-1.6) 		47.4
(-3) 		114.5
(1.4) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 150
(3)
P 		107.2
(1.2)
P 		68.8
(-0.4)
A 		6.1
(-3)
A 		28.3
(-2.1)
A 		68
(-0.4)
A 		144
B 193.4
(3)
P 		105.2
(-0)
M 		35.5
(-2.5)
A 		19.7
(-3)
A 		66.1
(-1.4)
A 		33.1
(-2.5)
A 		174
C 207.8
(3)
P 		103.7
(-0.2)
A 		32
(-2.4)
A 		13.6
(-3)
A 		29.1
(-2.5)
A 		56.6
(-1.7)
A 		194
avr 183.7
(3) 		105.4
(0.2) 		45.4
(-1.9) 		13.1
(-3) 		41.2
(-2) 		52.6
(-1.6) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 59.2
(3)
P 		14.1
(-2.5)
A 		10.4
(-3)
A 		16.9
(-2.2)
A 		49
B 42.7
(3)
P 		18.9
(-1.8)
A 		13.1
(-3)
A 		25.9
(-0.4)
P 		30
C 39.2
(3)
P 		18.4
(-2.4)
A 		16.1
(-3)
A 		17.9
(-2.5)
A 		23
avr 47
(3) 		17.1
(-2.3) 		13.2
(-3) 		20.2
(-1.8) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 27.6
(1.3)
P 		38.1
(3)
P 		15
(-0.8)
A 		1.6
(-3)
A 		8.5
(-1.9)
A 		16.6
(-0.5)
A 		37
B 67.3
(3)
P 		35
(-0.1)
M 		8.6
(-2.7)
A 		5.2
(-3)
A 		26.9
(-0.9)
A 		12.3
(-2.3)
A 		62
C 77
(3)
P 		31.6
(-0.7)
A 		8.1
(-2.6)
A 		2.7
(-3)
A 		9.4
(-2.5)
A 		18.9
(-1.7)
A 		74
avr 57.3
(3) 		34.9
(0.5) 		10.6
(-2.2) 		3.2
(-3) 		14.9
(-1.7) 		15.9
(-1.6) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177203_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18634
Sequence Type Exemplar sequence
Representative Public ID Y48G8AR.C NCBI
Target Description Y48G8AR.C /REP_DB=WormBase Gene ID /WP=CE22201 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60705.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058437(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058437 NCBI Caenorhabditis elegans Y48G8AR.2 (Y48G8AR.2) mRNA, complete cds. 11/11 None
GENEFINDER00000035864 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1282105:1285284:1 11/11 None
Y48G8AR.2 ENSEMBL cdna:known chromosome:CEL140:I:1283275:1285409:1 gene:Y48G8AR.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1283274-1285677(+) 87.04 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G8AR.2
Entrez Gene 171702 Entrez gene
SwissProt Q9N3N6 EMBL-EBI
WormBase CE32266 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE63924 Hypothetical protein CBG08497 [Caenorhabditis briggsae] 1.0E-145
blast AAF60705 Hypothetical protein Y48G8AR.2 [Caenorhabditis elegans] ref|NP_490838.2| Y48G8AR.2 [Caenorhabditis elegans] 1.0E-144
blast AAF60705 Hypothetical protein Y48G8AR.2 [Caenorhabditis elegans] ref|NP_490838.2| Y48G8AR.2 [Caenorhabditis elegans] 1.0E-129
blast CAE63924 Hypothetical protein CBG08497 [Caenorhabditis briggsae] 1.0E-116
Sequence
Target Sequence 
>C. ELEGANS:177203_S_AT
ggcgttgcatccaagagaagcgattggaagtccggcgccaaggccaatgtccagtactcc
attgagcggagttccagaagattcgactatccaaataccccaagttgagcgtcgccgcag
tgctttcgaaggttcccgaaggtctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGTTGCATCCAAGAGAAGCGATT 565 541 657 Antisense
AGAAGCGATTGGAAGTCCGGCGCCA 544 73 672 Antisense
CAAGGCCAATGTCCAGTACTCCATT 529 183 695 Antisense
AATGTCCAGTACTCCATTGAGCGGA 67 163 702 Antisense
GTACTCCATTGAGCGGAGTTCCAGA 685 457 710 Antisense
GAAGATTCGACTATCCAAATACCCC 622 335 733 Antisense
ATTCGACTATCCAAATACCCCAAGT 224 9 737 Antisense
GACTATCCAAATACCCCAAGTTGAG 39 371 741 Antisense
CAAATACCCCAAGTTGAGCGTCGCC 471 193 748 Antisense
CGCAGTGCTTTCGAAGGTTCCCGAA 378 253 772 Antisense
GCTTTCGAAGGTTCCCGAAGGTCTG 351 295 778 Antisense
Sequence Source Affymetrix Proprietary Database