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[177202_at]

Description Y48G8AR.C /REP_DB=WormBase Gene ID /WP=CE22201 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60705.1
Cluster 6grp_total > 23      4grp_total > 51      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 186
(0.7)
A 		217
(3)
A 		200.4
(1.8)
A 		134.6
(-3)
A 		82
B 153.2
(0.5)
A 		195.5
(3)
A 		174.7
(1.8)
A 		92.9
(-3)
A 		103
C 184.8
(1)
A 		223.8
(3)
A 		181.3
(0.8)
A 		107.6
(-3)
A 		116
avr 174.7
(0.8) 		212.1
(3) 		185.5
(1.4) 		111.7
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 203.1
(3)
A 		198.4
(2.8)
A 		149.6
(1.3)
A 		121.3
(0.3)
A 		81.3
(-1)
A 		19
(-3)
A 		184
B 240.8
(3)
A 		138.9
(0)
A 		199.5
(1.8)
A 		135.4
(-0.1)
A 		107.2
(-0.9)
A 		36.8
(-3)
A 		204
C 146.8
(2.5)
A 		156.7
(3)
A 		145.2
(2.4)
A 		112.7
(0.9)
A 		103.8
(0.4)
A 		32.7
(-3)
A 		124
avr 196.9
(3) 		164.7
(1.8) 		164.8
(1.8) 		123.1
(0.4) 		97.4
(-0.6) 		29.5
(-3) 		167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 67.7
(3)
A 		47.1
(0.4)
A 		52.4
(1.1)
A 		19.7
(-3)
A 		48
B 48.9
(3)
A 		48.3
(2.9)
A 		40.5
(1.3)
A 		19.8
(-3)
A 		29
C 61.2
(2.6)
A 		64.3
(3)
A 		63.2
(2.9)
A 		18.1
(-3)
A 		46
avr 59.3
(3) 		53.2
(2.1) 		52
(1.9) 		19.2
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 37.4
(-0)
A 		70.6
(3)
A 		32.6
(-0.5)
A 		30.8
(-0.6)
A 		24.5
(-1.2)
A 		4.6
(-3)
A 		66
B 83.8
(3)
A 		46.2
(-0.2)
A 		48.4
(-0)
A 		35.9
(-1.1)
A 		43.6
(-0.4)
A 		13.7
(-3)
A 		70
C 54.4
(3)
A 		47.8
(2.1)
A 		37
(0.6)
A 		22.7
(-1.4)
A 		33.6
(0.1)
A 		10.9
(-3)
A 		44
avr 58.5
(3) 		54.9
(2.6) 		39.3
(0.6) 		29.8
(-0.5) 		33.9
(-0) 		9.7
(-3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177202_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18634
Sequence Type Exemplar sequence
Representative Public ID Y48G8AR.C NCBI
Target Description Y48G8AR.C /REP_DB=WormBase Gene ID /WP=CE22201 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60705.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058437
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058437 NCBI Caenorhabditis elegans Y48G8AR.2 (Y48G8AR.2) mRNA, complete cds. A 
GENEFINDER00000035864 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1282105:1285284:1 None
SNAP00000035863 ENSEMBL cdna:SNAP chromosome:CEL140:I:1285579:1287835:1 None
Y48G8AR.2 ENSEMBL cdna:known chromosome:CEL140:I:1283275:1285409:1 gene:Y48G8AR.2 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1283274-1285677(+) 87.04 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G8AR.2
Entrez Gene 171702 Entrez gene
SwissProt Q9N3N6 EMBL-EBI
WormBase CE32266 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE63924 Hypothetical protein CBG08497 [Caenorhabditis briggsae] 1.0E-145
blast AAF60705 Hypothetical protein Y48G8AR.2 [Caenorhabditis elegans] ref|NP_490838.2| Y48G8AR.2 [Caenorhabditis elegans] 1.0E-144
blast AAF60705 Hypothetical protein Y48G8AR.2 [Caenorhabditis elegans] ref|NP_490838.2| Y48G8AR.2 [Caenorhabditis elegans] 1.0E-129
blast CAE63924 Hypothetical protein CBG08497 [Caenorhabditis briggsae] 1.0E-116
blast AAF60706 Hypothetical protein Y48G8AR.3 [Caenorhabditis elegans] ref|NP_490839.1| Y48G8AR.3 [Caenorhabditis elegans] 2.0E-59
Sequence
Target Sequence 
>C. ELEGANS:177202_AT
cgccacaccgccggcggtgaaaggaaaagcgccatacaaacgaaacctaaccctccccgc
aatccaaaccagctacctcagtgtccccgacgaagagcccggcctagtccaatcagccgg
cggcaactcaaatttctctccaaaattctggggaggatctccgtcgccgagaagtccgcg
atcgttctcgtccgccaattcttcaaatatcagcataaattctccagcagctccaaatga
ttccctacgggcgttgcatccaagagaagcgattggaagtccggcgccaaggccaatgtc
cagtactccattgagcggagttccagaagattcgactatccaaataccccaagttgagcg
tcgccgcagtgctttcgaaggttcccgaaggtctggaaagcttcgccgccagagcgaggc
gaccgtcccaacgtttcagctcagcaaggaccccagaaaatttgtggaggccgtgctcca
ctacgaccgtaaccggggatacttggccgtacacgttatggtgatcagatcggaaaagga
gaagggacggagacccgagtttgaggagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCACACCGCCGGCGGTGAAAGGA 151 257 408 Antisense
CCCGGCCTAGTCCAATCAGCCGGCG 224 253 505 Antisense
ATCAGCCGGCGGCAACTCAAATTTC 266 23 519 Antisense
AATTCTGGGGAGGATCTCCGTCGCC 495 173 551 Antisense
CGAGAAGTCCGCGATCGTTCTCGTC 318 251 575 Antisense
TCAGCATAAATTCTCCAGCAGCTCC 530 623 617 Antisense
AAATGATTCCCTACGGGCGTTGCAT 67 121 642 Antisense
TCAGCTCAGCAAGGACCCCAGAAAA 14 625 843 Antisense
TTGTGGAGGCCGTGCTCCACTACGA 152 707 869 Antisense
GGGATACTTGGCCGTACACGTTATG 293 495 903 Antisense
GACGGAGACCCGAGTTTGAGGAGTT 68 237 953 Antisense
Sequence Source Affymetrix Proprietary Database