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[177201_at]

Description Y71F9AM.B /REP_DB=WormBase Gene ID /WP=CE25561 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60864.1
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 91      6grp_total > 49      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 323
(3)
P 		323.4
(3)
P 		251.1
(-0.8)
P 		209.9
(-3)
P 		114
B 330.1
(2.2)
P 		328
(2.2)
P 		356.7
(3)
P 		149.2
(-3)
P 		208
C 290.8
(1.4)
P 		324.2
(2.2)
P 		357.4
(3)
P 		101.7
(-3)
P 		256
avr 314.6
(2.6) 		325.2
(3) 		321.7
(2.9) 		153.6
(-3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 170.2
(-2.2)
P 		280.9
(3)
P 		200.3
(-0.8)
P 		271.8
(2.6)
P 		152.6
(-3)
P 		235.1
(0.9)
P 		128
B 222.9
(0.7)
P 		157
(-2.8)
P 		153.8
(-3)
P 		249.6
(2.1)
P 		266.2
(3)
P 		233.6
(1.3)
P 		112
C 322
(3)
P 		193.7
(-2.3)
P 		254.1
(0.2)
P 		177.4
(-3)
P 		285.3
(1.5)
P 		234.3
(-0.6)
P 		145
avr 238.4
(3) 		210.5
(-1.7) 		202.7
(-3) 		232.9
(2.1) 		234.7
(2.4) 		234.3
(2.3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 117.6
(3)
P 		70.2
(-0.3)
P 		65.6
(-0.6)
P 		30.7
(-3)
P 		87
B 105.3
(3)
P 		81
(1)
P 		82.6
(1.1)
P 		31.8
(-3)
P 		74
C 96.3
(1.4)
P 		93.2
(1.2)
P 		124.6
(3)
P 		17.1
(-3)
P 		108
avr 106.4
(3) 		81.5
(1.1) 		90.9
(1.8) 		26.5
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 31.4
(-3)
P 		99.9
(3)
P 		43.6
(-1.9)
P 		68.9
(0.3)
P 		46
(-1.7)
P 		57.2
(-0.7)
P 		69
B 77.6
(0.4)
P 		52.3
(-1.7)
P 		37.4
(-3)
P 		66.1
(-0.6)
P 		108.1
(3)
P 		87.1
(1.2)
P 		71
C 119.3
(3)
P 		59.1
(-1.3)
P 		64.7
(-0.9)
P 		35.7
(-3)
P 		92.3
(1.1)
P 		78.4
(0.1)
P 		84
avr 76.1
(1.9) 		70.4
(0.9) 		48.6
(-3) 		56.9
(-1.5) 		82.1
(3) 		74.2
(1.6) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177201_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18730
Sequence Type Exemplar sequence
Representative Public ID Y71F9AM.B NCBI
Target Description Y71F9AM.B /REP_DB=WormBase Gene ID /WP=CE25561 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60864.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026635(11), NM_001026636(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026635 NCBI Caenorhabditis elegans Y71F9AM.4a (Y71F9AM.4) mRNA, complete cds. 11/11 None
NM_001026636 NCBI Caenorhabditis elegans Y71F9AM.4b (Y71F9AM.4) mRNA, complete cds. 11/11 None
SNAP00000002739 ENSEMBL cdna:SNAP chromosome:CEL140:I:2931462:2940249:1 11/11 None
Y71F9AM.4a ENSEMBL cdna:known chromosome:CEL140:I:2931462:2947153:1 gene:Y71F9AM.4 11/11 A 
Y71F9AM.4b ENSEMBL cdna:known chromosome:CEL140:I:2936043:2944611:1 gene:Y71F9AM.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2929840-2938390(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y71F9AM.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT81182 Hypothetical protein Y71F9AM.4a [Caenorhabditis elegans] ref|NP_001021806.1| Y71F9AM.4a [Caenorhabditis elegans] 0.0
blast AAO21418 Hypothetical protein Y71F9AM.4b [Caenorhabditis elegans] ref|NP_001021807.1| Y71F9AM.4b [Caenorhabditis elegans] 0.0
blast CAE60581 Hypothetical protein CBG04215 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007265 EMBL-EBI Sec34-like protein 7.2E-24
Sequence
Target Sequence 
>C. ELEGANS:177201_AT
gtcgtttgactcgtgacgcatgcacattcatgctccgaacatgtgacgatgaatatcgtc
tctaccgtcaattctttgtaactcgacataccgaagaacggaaactatcaactgacggaa
gaattagtccagcaatgtctacaattacttctgtattcacttctgcacaatctccacaac
aagttcacccatttgagacgttttccgagcaaatgtgccgtactttgtacgatatgctcc
gtccgagaatagttcataatccacacttggaaacacttgcagagctgtgtacaatgatta
aaattgaaatgattgaaaatcgatgttcacttcaaatggtagcatcaattcttggagatg
atgcatcaaatgatcaaaatgtttctgggctcaatccgagagctggatttgtttctgtga
tgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGTTTGACTCGTGACGCATGCAC 476 471 1424 Antisense
GACGCATGCACATTCATGCTCCGAA 334 381 1438 Antisense
TCGTCTCTACCGTCAATTCTTTGTA 353 603 1479 Antisense
TTACTTCTGTATTCACTTCTGCACA 431 681 1568 Antisense
AATCTCCACAACAAGTTCACCCATT 586 169 1592 Antisense
TCACCCATTTGAGACGTTTTCCGAG 666 413 1608 Antisense
GTTTTCCGAGCAAATGTGCCGTACT 226 449 1623 Antisense
TTTGTACGATATGCTCCGTCCGAGA 461 667 1647 Antisense
TCCACACTTGGAAACACTTGCAGAG 525 585 1683 Antisense
AATGTTTCTGGGCTCAATCCGAGAG 31 161 1801 Antisense
GAGCTGGATTTGTTTCTGTGATGAG 386 387 1823 Antisense
Sequence Source Affymetrix Proprietary Database