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[177200_at]

Description Y39A3CL.4 /REP_DB=WormBase Gene ID /WP=CE25257 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60520.1
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 92      6grp_total > 98      4grp_total > 05      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 261.6
(-0.4)
P 		262
(-0.4)
P 		220.9
(-3)
P 		316.6
(3)
P 		96
B 229.8
(-0.1)
P 		232.9
(0.2)
P 		195.4
(-3)
P 		266.1
(3)
P 		71
C 250.6
(1.3)
P 		188.9
(-3)
P 		275.1
(3)
P 		222.9
(-0.6)
P 		86
avr 247.3
(-0.1) 		227.9
(-3) 		230.5
(-2.6) 		268.5
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 263.3
(-2.8)
P 		261.6
(-2.9)
P 		256.9
(-3)
P 		277.2
(-2.4)
P 		348.7
(-0.3)
P 		461.2
(3)
P 		204
B 214.1
(-2.3)
P 		175.7
(-3)
P 		309.6
(-0.6)
P 		252.8
(-1.6)
P 		503.8
(3)
P 		493
(2.8)
P 		328
C 228.8
(-3)
P 		243.7
(-2.6)
P 		249.8
(-2.4)
P 		334
(-0)
P 		441.2
(3)
P 		401.7
(1.9)
P 		212
avr 235.4
(-2.8) 		227
(-3) 		272.1
(-1.8) 		288
(-1.4) 		431.2
(2.4) 		452
(3) 		225
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 95.2
(3)
P 		56.9
(-1.7)
P 		57.7
(-1.6)
P 		46.3
(-3)
P 		49
B 73.3
(3)
P 		57.5
(-0.4)
P 		45.3
(-3)
P 		56.7
(-0.6)
P 		28
C 83
(1.7)
P 		54.3
(-1.3)
P 		95.9
(3)
P 		37.6
(-3)
P 		58
avr 83.8
(3) 		56.2
(-1.5) 		66.3
(0.2) 		46.9
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 48.5
(-3)
P 		93
(1.2)
P 		55.9
(-2.3)
P 		70.3
(-0.9)
P 		105.2
(2.3)
P 		112.3
(3)
P 		64
B 74.5
(-2.3)
P 		58.5
(-3)
P 		75.2
(-2.3)
P 		67
(-2.7)
P 		204.7
(3)
P 		183.8
(2.1)
P 		146
C 84.8
(-1.4)
P 		74.4
(-2.2)
P 		63.6
(-3)
P 		67.2
(-2.7)
P 		142.8
(3)
P 		134.5
(2.4)
P 		79
avr 69.3
(-2.7) 		75.3
(-2.3) 		64.9
(-3) 		68.2
(-2.8) 		150.9
(3) 		143.5
(2.5) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177200_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8106
Sequence Type Exemplar sequence
Representative Public ID Y39A3CL.4 NCBI
Target Description Y39A3CL.4 /REP_DB=WormBase Gene ID /WP=CE25257 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60520.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065055(11), NM_065056(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065055 NCBI Caenorhabditis elegans Y39A3CL.4a (Y39A3CL.4) mRNA, complete cds. 11/11 None
NM_065056 NCBI Caenorhabditis elegans Y39A3CL.4b (Y39A3CL.4) mRNA, complete cds. 10/11 None
GENEFINDER00000009095 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1772635:1777406:-1 11/11 None
Y39A3CL.4a ENSEMBL cdna:known chromosome:CEL140:III:1772556:1777597:-1 gene:Y39A3CL.4 11/11 None
Y39A3CL.4b ENSEMBL cdna:known chromosome:CEL140:III:1772635:1778058:-1 gene:Y39A3CL.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1775493-1778058(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y39A3CL.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68885 Hypothetical protein Y39A3CL.4a [Caenorhabditis elegans] ref|NP_497456.2| Y39A3CL.4a [Caenorhabditis elegans] 0.0
blast AAK68886 Hypothetical protein Y39A3CL.4b [Caenorhabditis elegans] ref|NP_497457.1| Y39A3CL.4b [Caenorhabditis elegans] 0.0
blast AAK68886 Hypothetical protein Y39A3CL.4b [Caenorhabditis elegans] ref|NP_497457.1| Y39A3CL.4b [Caenorhabditis elegans] 1.0E-172
blast AAK68885 Hypothetical protein Y39A3CL.4a [Caenorhabditis elegans] ref|NP_497456.2| Y39A3CL.4a [Caenorhabditis elegans] 1.0E-172
Sequence
Target Sequence 
>C. ELEGANS:177200_AT
gaaaaagcctcaaatccaacacttgaagcctatttcacgcgaatttccgacggaaaaaat
gaaatttcagcggaaaaacttaaaagcattttccagcaagatctatcgggaagtctcatg
aaatacctcacaggcgacacaaattcgaatttagtgactcaccagcaatttatggacaaa
ttcacgccattatacggaacttccaccgatatttatgtgaaaattctccaaccagtgcac
cactttctcaaagtttgctcagattcggcgggcgccggggcgattcagggcgatgagcag
tttatcaagattttggtggaagaaatgacagatggaaaaacaggcgatgaggcgactcaa
tcgataatccggtggcgacgggaaaattgcgaaaaattcacgcaagccgtccaaaatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAAGCCTCAAATCCAACACTTG 222 355 109 Antisense
GAAGCCTATTTCACGCGAATTTCCG 327 343 133 Antisense
AAGCATTTTCCAGCAAGATCTATCG 163 151 192 Antisense
GAAATACCTCACAGGCGACACAAAT 147 363 228 Antisense
TCACGCCATTATACGGAACTTCCAC 3 625 290 Antisense
GTGAAAATTCTCCAACCAGTGCACC 333 481 325 Antisense
ACCAGTGCACCACTTTCTCAAAGTT 216 87 339 Antisense
CAAAGTTTGCTCAGATTCGGCGGGC 328 193 357 Antisense
GCCGGGGCGATTCAGGGCGATGAGC 453 281 382 Antisense
GACTCAATCGATAATCCGGTGGCGA 570 371 462 Antisense
AATTCACGCAAGCCGTCCAAAATCG 246 177 503 Antisense
Sequence Source Affymetrix Proprietary Database