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[177198_at]

Description M6.4 /REP_DB=WormBase Gene ID /WP=CE07385 /TR=Q21577 /GB=AAA98705.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 52.6
(0.1)
A 		3.1
(-3)
A 		38.1
(-0.8)
A 		98.6
(3)
P 		96
B 80.4
(1.5)
A 		36.3
(-1.2)
A 		6.7
(-3)
A 		104.2
(3)
A 		98
C 63.9
(1.7)
A 		49.2
(-0.4)
A 		31.4
(-3)
A 		73.2
(3)
P 		42
avr 65.6
(0.6) 		29.5
(-2.6) 		25.4
(-3) 		92
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 20.4
(3)
A 		9.2
(-0.7)
A 		4.8
(-2.1)
A 		2.2
(-3)
A 		4.7
(-2.2)
A 		3.4
(-2.6)
A 		18
B 31.6
(3)
A 		6.2
(-2.5)
A 		5.4
(-2.7)
A 		4.1
(-3)
A 		13.2
(-1)
A 		10.7
(-1.6)
A 		28
C 36.5
(3)
A 		13.2
(-1)
A 		1.9
(-3)
A 		2.3
(-2.9)
A 		3.2
(-2.8)
A 		21.8
(0.5)
A 		35
avr 29.5
(3) 		9.5
(-1.5) 		4
(-2.8) 		2.9
(-3) 		7
(-2.1) 		12
(-0.9) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 19.2
(3)
A 		0.7
(-3)
A 		10
(0)
A 		14.4
(1.4)
P 		19
B 25.6
(3)
A 		9
(-1.2)
A 		1.6
(-3)
A 		22.2
(2.2)
A 		24
C 21.1
(3)
A 		14.1
(-1.1)
A 		10.9
(-3)
A 		12.3
(-2.2)
P 		10
avr 22
(3) 		7.9
(-2.8) 		7.5
(-3) 		16.3
(0.6) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.8
(3)
A 		3.3
(2.1)
A 		1
(-2.3)
A 		0.6
(-3)
A 		1.4
(-1.5)
A 		0.8
(-2.6)
A 		3
B 11
(3)
A 		2.1
(-2.4)
A 		1.3
(-2.9)
A 		1.1
(-3)
A 		5.4
(-0.4)
A 		4
(-1.2)
A 		10
C 13.5
(3)
A 		4
(-1.4)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1
(-2.8)
A 		7.3
(0.1)
A 		13
avr 9.4
(3) 		3.1
(-1.3) 		0.9
(-2.9) 		0.7
(-3) 		2.6
(-1.7) 		4
(-0.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177198_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18448
Sequence Type Exemplar sequence
Representative Public ID M6.4 NCBI
Target Description M6.4 /REP_DB=WormBase Gene ID /WP=CE07385 /TR=Q21577 /GB=AAA98705.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075729
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075729 NCBI Caenorhabditis elegans M6.4 (M6.4) mRNA, complete cds. None
M6.4 ENSEMBL cdna:known chromosome:CEL140:X:629188:632867:1 gene:M6.4 None
GENEFINDER00000028059 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:629236:632526:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028054 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:629187-631692(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M6.4
Entrez Gene 187455 Entrez gene
SwissProt Q21577 EMBL-EBI
WormBase CE31206 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA98705 Hypothetical protein M6.4 [Caenorhabditis elegans] ref|NP_508130.2| M6.4 [Caenorhabditis elegans] 1.0E-114
blast AAA98705 Hypothetical protein M6.4 [Caenorhabditis elegans] ref|NP_508130.2| M6.4 [Caenorhabditis elegans] 1.0E-104
blast CAE63641 Hypothetical protein CBG08139 [Caenorhabditis briggsae] 2.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508130.2 1 21-40
M6.4 1 21-40
Sequence
Target Sequence 
>C. ELEGANS:177198_AT
tcctacagctaccaacagttcacattcgagctctgtgattgtccggagagcaagtcgtgc
ccaatggacaacgtggctaaagttgaccctattttccggnnnnnnnnnnnnnnnnnnnnn
nnnnnnnngattgttctgcaagtttttagtgatttaaacaattttgacagcagggaaaca
attttgaatttttttttccaaaatatttcactactcttgaacaccattaaaactatcaaa
cacgaaatttcaggagtgtattttgaatctcaacttttagtggaaatcggaacgtttgaa
aataatgtttcatttgaatctattatatataatttgacattttgtgcggctcgagagctg
ccagaatgcgcttccgacgagacggcagccgagatcaacatgctgcaaacatcaatttac
tgtgtatgcccacccaatcagatttatgtcaaacagaaggacacgtcaaaagccaatgct
aaatacgtgtgccaggaaaaagcaatgtgcgagcctggacagatgtgcgga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTACAGCTACCAACAGTTCACAT 659 589 178 Antisense
ACATTCGAGCTCTGTGATTGTCCGG 237 105 199 Antisense
TTGTCCGGAGAGCAAGTCGTGCCCA 405 687 216 Antisense
GTCGTGCCCAATGGACAACGTGGCT 608 469 231 Antisense
TGGCTAAAGTTGACCCTATTTTCCG 383 539 251 Antisense
GACATTTTGTGCGGCTCGAGAGCTG 222 371 513 Antisense
TCGAGAGCTGCCAGAATGCGCTTCC 439 601 528 Antisense
GAGACGGCAGCCGAGATCAACATGC 320 393 556 Antisense
AATTTACTGTGTATGCCCACCCAAT 469 175 591 Antisense
GCCAATGCTAAATACGTGTGCCAGG 659 277 649 Antisense
GTGCGAGCCTGGACAGATGTGCGGA 594 477 684 Antisense
Sequence Source Affymetrix Proprietary Database