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[177197_at] 7TM chemoreceptor, sri family

Description AC3.1 /REP_DB=WormBase Gene ID /WP=CE05131 /TR=Q17398 /GB=CAA94865.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 01      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 8.7
(-3)
A 		35.1
(1.4)
A 		12.8
(-2.3)
A 		44.7
(3)
A 		36
B 34.4
(-2.9)
A 		33.7
(-3)
A 		43.4
(-1.4)
A 		69.2
(3)
P 		36
C 30.1
(-1.3)
A 		5.7
(-3)
A 		42.6
(-0.5)
A 		94.3
(3)
P 		89
avr 24.4
(-3) 		24.8
(-2.9) 		32.9
(-1.9) 		69.4
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 10.1
(-3)
A 		24.3
(-0.8)
A 		49.7
(3)
A 		44.7
(2.2)
A 		24.4
(-0.8)
A 		16.1
(-2.1)
A 		40
B 46.8
(3)
A 		46.3
(2.9)
P 		22.7
(-0.5)
A 		27.2
(0.2)
A 		33.7
(1.1)
A 		4.9
(-3)
A 		42
C 7.6
(-3)
A 		63.2
(3)
A 		35.8
(0)
A 		39.8
(0.5)
A 		30.2
(-0.6)
A 		33.5
(-0.2)
A 		56
avr 21.5
(-2.3) 		44.6
(3) 		36.1
(1.1) 		37.2
(1.3) 		29.4
(-0.5) 		18.2
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.2
(-3)
A 		7.6
(3)
A 		3.4
(-2.7)
A 		6.5
(1.5)
A 		4
B 11
(-0.5)
A 		8.3
(-3)
A 		10.1
(-1.3)
A 		14.7
(3)
P 		6
C 10
(0.5)
A 		1.6
(-3)
A 		14.9
(2.6)
A 		15.9
(3)
P 		14
avr 8.1
(-0.9) 		5.8
(-3) 		9.5
(0.4) 		12.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.9
(-3)
A 		8.7
(1.3)
A 		10.8
(2.7)
A 		11.3
(3)
A 		7.4
(0.5)
A 		3.9
(-1.7)
A 		9
B 16.3
(3)
A 		15.4
(2.6)
P 		5.5
(-1.5)
A 		7.2
(-0.8)
A 		13.7
(1.9)
A 		1.8
(-3)
A 		15
C 2.8
(-3)
A 		19.3
(3)
A 		9.1
(-0.7)
A 		8
(-1.1)
A 		9.8
(-0.5)
A 		11.2
(0.1)
A 		17
avr 7
(-2.1) 		14.5
(3) 		8.5
(-1) 		8.8
(-0.8) 		10.3
(0.2) 		5.6
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177197_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12371
Sequence Type Exemplar sequence
Representative Public ID AC3.1 NCBI
Target Description AC3.1 /REP_DB=WormBase Gene ID /WP=CE05131 /TR=Q17398 /GB=CAA94865.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073264
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AC3.1 ENSEMBL cdna:known chromosome:CEL140:V:10371138:10372450:1 gene:AC3.1 None
GENEFINDER00000028851 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10371138:10372450:1 None
NM_073264 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-20) (sri-20) mRNA, complete cds. None
SNAP00000028832 ENSEMBL cdna:SNAP chromosome:CEL140:V:10371144:10372450:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10371202-10372641(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-20
Ensembl AC3.1
Entrez Gene 181799 Entrez gene
SwissProt Q17398 EMBL-EBI
WormBase CE33589 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94865 Hypothetical protein AC3.1 [Caenorhabditis elegans] ref|NP_505665.2| Serpentine Receptor, class I family member (sri-20) [Caenorhabditis elegans] 0.0
blast CAA94865 Hypothetical protein AC3.1 [Caenorhabditis elegans] ref|NP_505665.2| Serpentine Receptor, class I family member (sri-20) [Caenorhabditis elegans] 1.0E-179
blast CAA94865 Hypothetical protein AC3.1 [Caenorhabditis elegans] ref|NP_505665.2| Serpentine Receptor, class I family member (sri-20) [Caenorhabditis elegans] 1.0E-178
blast CAE64802 Hypothetical protein CBG09595 [Caenorhabditis briggsae] 1.0E-150
blast CAE64802 Hypothetical protein CBG09595 [Caenorhabditis briggsae] 1.0E-147
blast AAK72086 Serpentine receptor, class i protein 39 [Caenorhabditis elegans] ref|NP_494301.2| Serpentine Receptor, class I family member (sri-39) [Caenorhabditis elegans] 1.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.3E-85
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.3E-85
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505665.2 7 26-48,80-99,109-126,147-169,202-224,255-277,287-309
AC3.1 7 26-48,80-99,109-126,147-169,202-224,255-277,287-309
SNAP00000028832 7 24-46,78-97,107-124,145-167,200-222,253-275,285-307
GENEFINDER00000028851 7 26-48,80-99,109-126,147-169,202-224,255-277,287-309
Sequence
Target Sequence 
>C. ELEGANS:177197_AT
aagcatcgagccactttgagaagtcttttagctcagtttacaacgtgtttcttgattgtt
ggtccagcgtctttgttctctttactggtagttataagatatgaacatagtcaagtagca
acacattggaccattgttgctctaactctccattccagtgcaaatgcaattatcattcca
cttcgcatcatctcaatatcaacggtctactctcccgaatacaagaattcaaacggagcg
aagtattgcagtaacaataacaacccattaacttctaatttcccgagtttcaaacttgta
aataaactttttcgtcttttgatgatactgttttattatttcaaattgaaagttccagat
ctcttgagcttctgtgatttcactcatttcgataacccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCATCGAGCCACTTTGAGAAGTC 256 151 622 Antisense
GAAGTCTTTTAGCTCAGTTTACAAC 8 335 641 Antisense
ACGTGTTTCTTGATTGTTGGTCCAG 529 95 664 Antisense
GTCTTTGTTCTCTTTACTGGTAGTT 89 467 690 Antisense
TGGACCATTGTTGCTCTAACTCTCC 31 549 748 Antisense
CTAACTCTCCATTCCAGTGCAAATG 470 227 763 Antisense
CACTTCGCATCATCTCAATATCAAC 221 197 800 Antisense
TATCAACGGTCTACTCTCCCGAATA 251 661 818 Antisense
GAAAGTTCCAGATCTCTTGAGCTTC 290 359 969 Antisense
CTCTTGAGCTTCTGTGATTTCACTC 436 229 982 Antisense
GATTTCACTCATTTCGATAACCCGG 237 429 997 Antisense
Sequence Source Affymetrix Proprietary Database