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[177196_s_at]

Description M88.2 /REP_DB=WormBase Gene ID /WP=CE23884 /TR=Q21601 /GB=CAA84334.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 65      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 76      6grp_total > 56      4grp_total > 56      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 998
1 2 3 4 range
A 1009.4
(-1)
P 		1061.4
(-0.6)
P 		1528
(3)
P 		744.7
(-3)
P 		783
B 1085.6
(-0.5)
P 		1343.8
(1.1)
P 		1646.3
(3)
P 		690.1
(-3)
P 		956
C 1051.3
(-0.6)
P 		1299.9
(0.9)
P 		1645.7
(3)
P 		647.9
(-3)
P 		998
avr 1048.8
(-0.7) 		1235
(0.6) 		1606.7
(3) 		694.2
(-3) 		913

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 786
1 2 3 4 5 6 range
A 1156.8
(2.1)
P 		949.5
(-1.7)
P 		1208.3
(3)
P 		875.2
(-3)
P 		1060.2
(0.3)
P 		1035.5
(-0.1)
P 		333
B 1052.6
(-3)
P 		1094.9
(-2.1)
P 		1145.5
(-1)
P 		1111.6
(-1.7)
P 		1088.9
(-2.2)
P 		1334
(3)
P 		281
C 815.3
(-2.1)
P 		1272.7
(1.4)
P 		1017
(-0.5)
P 		1070.8
(-0.1)
P 		695.4
(-3)
P 		1481.7
(3)
P 		786
avr 1008.2
(-1.9) 		1105.7
(-0.2) 		1123.6
(0.1) 		1019.2
(-1.7) 		948.2
(-3) 		1283.7
(3) 		336
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 465
1 2 3 4 range
A 367.5
(2.3)
P 		230.4
(-0.5)
P 		399.4
(3)
P 		109
(-3)
P 		290
B 346.2
(2.1)
P 		331.9
(1.7)
P 		381.5
(3)
P 		147.1
(-3)
P 		234
C 348
(0.1)
P 		373.7
(0.4)
P 		573.6
(3)
P 		109.2
(-3)
P 		464
avr 353.9
(1.2) 		312
(0.5) 		451.5
(3) 		121.8
(-3) 		330

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 213.3
(-3)
P 		337.7
(3)
P 		263.1
(-0.6)
P 		222
(-2.6)
P 		319.9
(2.1)
P 		252.1
(-1.1)
P 		124
B 366.3
(-0.6)
P 		364.5
(-0.6)
P 		278.2
(-3)
P 		294.4
(-2.6)
P 		442.4
(1.5)
P 		497.4
(3)
P 		219
C 302.2
(-1.1)
P 		388.3
(0.7)
P 		258.8
(-2.1)
P 		215.3
(-3)
P 		225
(-2.8)
P 		496
(3)
P 		281
avr 293.9
(-1.2) 		363.5
(1.2) 		266.7
(-2.2) 		243.9
(-3) 		329.1
(-0) 		415.2
(3) 		171
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177196_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6222
Sequence Type Exemplar sequence
Representative Public ID M88.2 NCBI
Target Description M88.2 /REP_DB=WormBase Gene ID /WP=CE23884 /TR=Q21601 /GB=CAA84334.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065518(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065518 NCBI Caenorhabditis elegans M88.2 (M88.2) mRNA, complete cds. 11/11 None
GENEFINDER00000031344 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4541504:4542411:-1 10/11 None
M88.2 ENSEMBL cdna:known chromosome:CEL140:III:4541410:4542417:-1 gene:M88.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031337 8/11 Cross Hyb Matching Probes None
SNAP00000031338 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4541503-4542411(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M88.2
Entrez Gene 175592 Entrez gene
SwissProt Q21601 EMBL-EBI
WormBase CE23884 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84334 Hypothetical protein M88.2 [Caenorhabditis elegans] ref|NP_497919.1| M88.2 [Caenorhabditis elegans] 1.0E-131
blast CAE71189 Hypothetical protein CBG18046 [Caenorhabditis briggsae] 1.0E-122
blast CAA84334 Hypothetical protein M88.2 [Caenorhabditis elegans] ref|NP_497919.1| M88.2 [Caenorhabditis elegans] 1.0E-109
blast CAE71189 Hypothetical protein CBG18046 [Caenorhabditis briggsae] 1.0E-100
blast XP_392037 PREDICTED: similar to ENSANGP00000021844 [Apis mellifera] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:177196_S_AT
tgttcgagattctctcacaactccgcaactttggtgtcggtcgtcttgttacaaagaatg
aatggacacggaaatggccgaataatccgtcatatatgaagattttgagggcagagccag
gcatggaccgatggttattcgaaggaaaagtttatgctgaatgggtctttcgtggaaaaa
atcttggcgtttatgagttttcaaaggatttgaacagaagtgactggcagctggtacaca
aacatcaagaaaaatcatatacatcgagcacaacaccaatgcaagatcttgttcttcccg
attcgtttccattgccaccacttcaagttcatttgtcacagaaaagtgctcgcaaaaatg
gtttggatgagaaaactgtgtcaagacgggctccgctcacacttagtgtcgatccagagt
tccagcacttgaagccgttcatcaaacaggaagctccttcaacaaaaagcgtgtcgatct
acgaggaagttgataagaatgcacttttggatctttacggaaacgaattgccagttaaag
ttgaagcttggaatgcaggaccagcaatgttccaaccacgatttaatgccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCGAGATTCTCTCACAACTCCG 71 563 74 Antisense
TTTGGTGTCGGTCGTCTTGTTACAA 379 667 103 Antisense
GCAGAGCCAGGCATGGACCGATGGT 184 311 184 Antisense
CATATACATCGAGCACAACACCAAT 258 215 329 Antisense
AAAACTGTGTCAAGACGGGCTCCGC 436 131 445 Antisense
GCTCCGCTCACACTTAGTGTCGATC 189 299 463 Antisense
TTAGTGTCGATCCAGAGTTCCAGCA 317 681 476 Antisense
TTCCAGCACTTGAAGCCGTTCATCA 426 697 493 Antisense
GAATGCACTTTTGGATCTTTACGGA 614 329 570 Antisense
GCAGGACCAGCAATGTTCCAACCAC 261 311 628 Antisense
GTTCCAACCACGATTTAATGCCACA 272 441 642 Antisense
Sequence Source Affymetrix Proprietary Database