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[177194_at]

Description R11.4 /REP_DB=WormBase Gene ID /WP=CE12720 /TR=O62344 /GB=CAB04648.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 100
(-3)
A 		197.5
(3)
A 		132.5
(-1)
A 		171.1
(1.4)
A 		98
B 99.1
(-3)
A 		185.2
(3)
A 		139.4
(-0.2)
A 		143
(0.1)
A 		86
C 145.9
(-0.5)
A 		180
(3)
A 		121.9
(-3)
A 		160.3
(1)
A 		58
avr 115
(-3) 		187.6
(3) 		131.3
(-1.7) 		158.1
(0.6) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 327
1 2 3 4 5 6 range
A 122.3
(-1.1)
A 		101.2
(-1.5)
A 		19.8
(-3)
A 		95.6
(-1.6)
A 		160.7
(-0.4)
A 		346.5
(3)
P 		327
B 84
(-2.9)
A 		79.2
(-3)
A 		92.6
(-2.6)
A 		86.6
(-2.8)
A 		162.9
(-0.7)
A 		295.3
(3)
P 		216
C 99.3
(-2.1)
A 		68.5
(-3)
A 		112.9
(-1.7)
A 		75.6
(-2.8)
A 		166.9
(-0.2)
A 		279.2
(3)
P 		211
avr 101.9
(-2.3) 		83
(-2.8) 		75.1
(-3) 		85.9
(-2.7) 		163.5
(-0.7) 		307
(3) 		232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 36.4
(0.8)
A 		42.9
(3)
A 		34.6
(0.2)
A 		25
(-3)
A 		18
B 31.6
(-2.6)
A 		45.7
(3)
A 		32.3
(-2.3)
A 		30.5
(-3)
A 		15
C 48.3
(2.2)
A 		51.7
(3)
A 		42.5
(0.8)
A 		27
(-3)
A 		25
avr 38.8
(0.5) 		46.8
(3) 		36.5
(-0.2) 		27.5
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 22.6
(-1.6)
A 		36
(-0.6)
A 		4.3
(-3)
A 		24.2
(-1.5)
A 		48.5
(0.3)
A 		84.4
(3)
P 		80
B 29.2
(-2.5)
A 		26.4
(-2.7)
A 		22.5
(-3)
A 		22.9
(-3)
A 		66.2
(-0)
A 		110.1
(3)
P 		88
C 36.8
(-1.3)
A 		20.9
(-2.6)
A 		28.7
(-2)
A 		15.2
(-3)
A 		54
(-0)
A 		93.5
(3)
P 		78
avr 29.5
(-2.1) 		27.8
(-2.3) 		18.5
(-3) 		20.8
(-2.8) 		56.2
(-0.1) 		96
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177194_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17620
Sequence Type Exemplar sequence
Representative Public ID R11.4 NCBI
Target Description R11.4 /REP_DB=WormBase Gene ID /WP=CE12720 /TR=O62344 /GB=CAB04648.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078239 NCBI Caenorhabditis elegans R11.4 (R11.4) mRNA, complete cds. 11/11 None
SNAP00000019697 ENSEMBL cdna:SNAP chromosome:CEL140:X:16210335:16210532:-1 11/11 None
GENEFINDER00000019701 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16210335:16210563:-1 11/11 None
R11.4 ENSEMBL cdna:known chromosome:CEL140:X:16210335:16210532:-1 gene:R11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16210334-16210532(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11.4
Entrez Gene 181693 Entrez gene
SwissProt O62344 EMBL-EBI
WormBase CE12720 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04648 Hypothetical protein R11.4 [Caenorhabditis elegans] ref|NP_510640.1| R11.4 [Caenorhabditis elegans] 1.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510640.1 1 44-62
R11.4 1 44-62
SNAP00000019697 1 44-62
GENEFINDER00000019701 1 55-72
Sequence
Target Sequence 
>C. ELEGANS:177194_AT
gaacaagatcatcccacttgtccagagctccaagacccaaaaggctgagaaggtcgccgt
cgagatgccagctgctcaaagcatccaggagcagtacgcctcagctcacacgtctactgg
aaaagagatcgccatctttgttggaattcttgtcatcgccattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAAGATCATCCCACTTGTCCAG 265 353 15 Antisense
TTGTCCAGAGCTCCAAGACCCAAAA 182 709 32 Antisense
GAGCTCCAAGACCCAAAAGGCTGAG 14 387 39 Antisense
AAAGGCTGAGAAGGTCGCCGTCGAG 625 119 54 Antisense
TGAGAAGGTCGCCGTCGAGATGCCA 123 569 60 Antisense
GTCGAGATGCCAGCTGCTCAAAGCA 89 475 73 Antisense
TGCCAGCTGCTCAAAGCATCCAGGA 147 587 80 Antisense
AAAGCATCCAGGAGCAGTACGCCTC 472 123 92 Antisense
CTCAGCTCACACGTCTACTGGAAAA 457 229 114 Antisense
GAGATCGCCATCTTTGTTGGAATTC 213 395 139 Antisense
GTTGGAATTCTTGTCATCGCCATTC 25 437 154 Antisense
Sequence Source Affymetrix Proprietary Database