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[177192_at]

Description M88.7 /REP_DB=WormBase Gene ID /WP=CE23887 /TR=Q9U3A1 /GB=CAB54281.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 31      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 75      6grp_total > 21      4grp_total > 57      6grp_highest_sub > 02_03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 721
1 2 3 4 range
A 860.4
(-1.5)
P 		1110.4
(1)
P 		1311.5
(3)
P 		710.7
(-3)
P 		601
B 840.4
(-1.5)
P 		1123.8
(1.1)
P 		1331.3
(3)
P 		683.9
(-3)
P 		647
C 909.5
(-0.1)
P 		1133.4
(2.1)
P 		1230.4
(3)
P 		609.9
(-3)
P 		621
avr 870.1
(-1.1) 		1122.5
(1.4) 		1291.1
(3) 		668.2
(-3) 		623

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 518
1 2 3 4 5 6 range
A 849.1
(-1.3)
P 		1030.3
(1.3)
P 		1148.3
(3)
P 		893.6
(-0.7)
P 		767.9
(-2.5)
P 		734.4
(-3)
P 		414
B 853.7
(-0.9)
P 		1184.3
(2.9)
P 		1191.3
(3)
P 		673.8
(-3)
P 		1063.8
(1.5)
P 		841.1
(-1.1)
P 		518
C 1026.6
(3)
P 		974.3
(1.6)
P 		879.9
(-1)
P 		808.6
(-3)
P 		873.6
(-1.2)
P 		913.6
(-0.1)
P 		218
avr 909.8
(-0.5) 		1063
(2.8) 		1073.2
(3) 		792
(-3) 		901.8
(-0.7) 		829.7
(-2.2) 		281
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 326
1 2 3 4 range
A 313.3
(2.3)
P 		241
(0.4)
P 		342.8
(3)
P 		104
(-3)
P 		239
B 268
(1.5)
P 		277.6
(1.9)
P 		308.5
(3)
P 		145.7
(-3)
P 		163
C 301.1
(0.6)
P 		325.9
(1.1)
P 		428.8
(3)
P 		102.8
(-3)
P 		326
avr 294.1
(1.4) 		281.5
(1.1) 		360
(3) 		117.5
(-3) 		243

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 156.5
(-3)
P 		366.4
(3)
P 		250.1
(-0.3)
P 		226.6
(-1)
P 		231.7
(-0.9)
P 		178.8
(-2.4)
P 		210
B 297.1
(-0.2)
P 		394.2
(2.1)
P 		289.3
(-0.4)
P 		178.5
(-3)
P 		432.2
(3)
P 		313.6
(0.2)
P 		254
C 380.5
(3)
P 		297.3
(0.7)
P 		224
(-1.3)
P 		162.6
(-3)
P 		282.7
(0.3)
P 		305.8
(0.9)
P 		218
avr 278
(0.3) 		352.6
(3) 		254.5
(-0.6) 		189.2
(-3) 		315.5
(1.6) 		266.1
(-0.2) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177192_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6328
Sequence Type Exemplar sequence
Representative Public ID M88.7 NCBI
Target Description M88.7 /REP_DB=WormBase Gene ID /WP=CE23887 /TR=Q9U3A1 /GB=CAB54281.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065519(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065519 NCBI Caenorhabditis elegans M88.7 (M88.7) mRNA, complete cds. 11/11 None
SNAP00000031339 ENSEMBL cdna:SNAP chromosome:CEL140:III:4542847:4545747:1 10/11 None
GENEFINDER00000031347 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4542847:4543358:1 10/11 None
M88.7 ENSEMBL cdna:known chromosome:CEL140:III:4542820:4546537:1 gene:M88.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4542819-4543362(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M88.7
Entrez Gene 175593 Entrez gene
SwissProt Q9U3A1 EMBL-EBI
WormBase CE34064 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1639763_AT dm
DROSGENOME1:142715_AT dm
Protein Similarities
Method ID Description E-Value
blast CAB54281 Hypothetical protein M88.7 [Caenorhabditis elegans] ref|NP_497920.2| M88.7 [Caenorhabditis elegans] 1.0E-101
blast CAB54281 Hypothetical protein M88.7 [Caenorhabditis elegans] ref|NP_497920.2| M88.7 [Caenorhabditis elegans] 3.0E-94
blast CAB54281 Hypothetical protein M88.7 [Caenorhabditis elegans] ref|NP_497920.2| M88.7 [Caenorhabditis elegans] 8.0E-81
blast CAE71188 Hypothetical protein CBG18045 [Caenorhabditis briggsae] 5.0E-80
blast CAE71188 Hypothetical protein CBG18045 [Caenorhabditis briggsae] 6.0E-80
blast CAE71188 Hypothetical protein CBG18045 [Caenorhabditis briggsae] 7.0E-68
blast EAL24727 GA17439-PA [Drosophila pseudoobscura] 6.0E-22
blast EAL24727 GA17439-PA [Drosophila pseudoobscura] 7.0E-22
Sequence
Target Sequence 
>C. ELEGANS:177192_AT
gaatgcggataactcaatcggctcaaatctgtttgtcagtcatcaaaaagagtcagaaaa
ccggatttggtccaaacaggcttcaaagaaagggaacacattttgtaggaaccgaaccac
cagttctgaaatatcatattcttcaagacaaaaaaccaaatgaggaatacggtctgcaag
gaaccaaccacgagcttcccggaactggaaaagtgcatagtaagctaccaactaaggttc
acatgaaaaaggataaagtttacgcatggtgcagttgtggatatagtggatcgcaaccac
tctgcgatggatcccacaattcaattcgaattcccgatcttaaattgaaaccagtacgat
ttattcctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCGGATAACTCAATCGGCTCA 313 331 38 Antisense
ATCGGCTCAAATCTGTTTGTCAGTC 629 33 54 Antisense
GGATTTGGTCCAAACAGGCTTCAAA 23 509 100 Antisense
GTAGGAACCGAACCACCAGTTCTGA 664 453 142 Antisense
GTCTGCAAGGAACCAACCACGAGCT 29 471 209 Antisense
CACGAGCTTCCCGGAACTGGAAAAG 136 195 226 Antisense
GTAAGCTACCAACTAAGGTTCACAT 333 461 257 Antisense
ATAGTGGATCGCAACCACTCTGCGA 646 21 320 Antisense
ACTCTGCGATGGATCCCACAATTCA 39 101 336 Antisense
ATTCAATTCGAATTCCCGATCTTAA 136 13 356 Antisense
GAAACCAGTACGATTTATTCCTGAT 617 357 384 Antisense
Sequence Source Affymetrix Proprietary Database