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[177191_s_at]

Description 3R5.2 /REP_DB=WormBase Gene ID /WP=CE25735 /TR=Q9XWB1 /GB=CAA21778.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 63      4grp_high_8_8 > 19      6grp_highest_nonorm > 70      6grp_total > 28      4grp_total > 29      6grp_highest_sub > Cu      6grp_cgc > 03      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 355.1
(1.1)
P 		390.7
(3)
P 		277.4
(-3)
P 		342.4
(0.4)
P 		113
B 358.9
(2.5)
P 		367.6
(3)
P 		263.2
(-3)
P 		301.9
(-0.8)
P 		104
C 453.4
(0.6)
P 		356.2
(-3)
P 		399.4
(-1.4)
P 		519.3
(3)
P 		163
avr 389.1
(3) 		371.5
(1.6) 		313.3
(-3) 		387.9
(2.9) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 343.2
(2.2)
P 		363.1
(3)
P 		222.5
(-3)
P 		273.2
(-0.8)
P 		273.5
(-0.8)
P 		305.3
(0.5)
P 		141
B 395.6
(3)
P 		334.8
(0.5)
P 		247.3
(-3)
P 		272.5
(-2)
P 		279.9
(-1.7)
P 		260
(-2.5)
P 		148
C 386.1
(3)
P 		308.3
(-0.2)
P 		334.9
(0.9)
P 		241.4
(-3)
P 		377
(2.6)
P 		306.8
(-0.3)
P 		145
avr 375
(3) 		335.4
(0.9) 		268.2
(-2.7) 		262.4
(-3) 		310.1
(-0.5) 		290.7
(-1.5) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 129.3
(3)
P 		84.8
(-0.4)
P 		72.5
(-1.3)
P 		50.1
(-3)
P 		79
B 114.4
(3)
P 		90.8
(0.3)
P 		61
(-3)
P 		64.3
(-2.6)
P 		53
C 150.1
(3)
P 		102.4
(-1.6)
P 		139.2
(2)
P 		87.6
(-3)
P 		63
avr 131.3
(3) 		92.7
(-0.6) 		90.9
(-0.8) 		67.3
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 63.3
(-1.9)
P 		129.1
(3)
P 		48.5
(-3)
P 		69.3
(-1.5)
P 		82.5
(-0.5)
P 		74.3
(-1.1)
P 		81
B 137.6
(3)
P 		111.4
(1)
P 		60.1
(-3)
P 		72.2
(-2.1)
P 		113.7
(1.1)
P 		97
(-0.1)
P 		78
C 143.1
(3)
P 		94.1
(-0.1)
P 		85.2
(-0.7)
P 		48.5
(-3)
P 		122
(1.7)
P 		102.7
(0.4)
P 		95
avr 114.7
(3) 		111.5
(2.6) 		64.6
(-2.8) 		63.3
(-3) 		106.1
(2) 		91.3
(0.3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177191_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7147
Sequence Type Exemplar sequence
Representative Public ID 3R5.2 NCBI
Target Description 3R5.2 /REP_DB=WormBase Gene ID /WP=CE25735 /TR=Q9XWB1 /GB=CAA21778.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067446(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067446 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-29) (mdt-29) mRNA, complete cds. 11/11 A 
GENEFINDER00000031970 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13771047:13778175:1 11/11 None
SNAP00000031968 ENSEMBL cdna:SNAP chromosome:CEL140:III:13772986:13778175:1 11/11 None
K08E3.8.2 ENSEMBL cdna:known chromosome:CEL140:III:13772970:13778412:1 gene:K08E3.8 11/11 None
K08E3.8.1 ENSEMBL cdna:known chromosome:CEL140:III:13772972:13778412:1 gene:K08E3.8 11/11 None
3R5.2 ENSEMBL cdna:pseudogene chromosome:CEL140:III:13782096:13782968:1 gene:3R5.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13782086-13782964(+) 90.99 94.76
chrIII:13776885-13777761(+) 90.57 90.57
Public Domain and Genome References
Gene Title
Gene Symbol mdt-29
Ensembl K08E3.8
3R5.2
Entrez Gene 176817 Entrez gene
SwissProt Q9XUS2 EMBL-EBI
WormBase CE18874 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from sequence similarity QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from physical interaction QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04600 Hypothetical protein K08E3.8 [Caenorhabditis elegans] ref|NP_499847.1| MeDiaTor family member (mdt-29) [Caenorhabditis elegans] 0.0
blast CAB04599 Hypothetical protein K08E3.7 [Caenorhabditis elegans] ref|NP_499846.2| Parkinson's Disease Related family member (pdr-1) [Caenorhabditis elegans] 1.0E-157
blast CAE71359 Hypothetical protein CBG18262 [Caenorhabditis briggsae] 1.0E-129
blast CAE71358 Hypothetical protein CBG18261 [Caenorhabditis briggsae] 1.0E-105
Sequence
Target Sequence 
>C. ELEGANS:177191_S_AT
ggttctagctccaggttcaatacctcccggcgggccagcttcccaaacaggaccccaatc
gattcaagtcttcggacccggctccgtgcagccaccaggctcaacacaggctccgtcctc
agtccaaccggcttccacattcaatccaggctcgattcaggctccggcaagccagcagcc
gcctgcatcagttcaaccaccgccatctgcagcgtcgggctcaactgtggccggtgcaca
gagctccaaagagccgctgaaaccgaatgaggagcaaattcgaatggttcaggatcctgt
ggatttggttcgaaatttggtgcaaaaggatctcagaaattcgttggtggaaatgaacaa
acgcggtgcggagcttgtgcgtcagaaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCTAGCTCCAGGTTCAATACCT 688 505 42 Antisense
TCCCAAACAGGACCCCAATCGATTC 306 597 82 Antisense
AATCGATTCAAGTCTTCGGACCCGG 478 167 98 Antisense
TTCCACATTCAATCCAGGCTCGATT 563 699 174 Antisense
TTCAATCCAGGCTCGATTCAGGCTC 674 683 181 Antisense
AGCTCCAAAGAGCCGCTGAAACCGA 394 81 283 Antisense
AATTCGAATGGTTCAGGATCCTGTG 457 177 318 Antisense
GGATCCTGTGGATTTGGTTCGAAAT 377 511 333 Antisense
AAAAGGATCTCAGAAATTCGTTGGT 177 127 365 Antisense
GAACAAACGCGGTGCGGAGCTTGTG 29 353 396 Antisense
TGCGGAGCTTGTGCGTCAGAAACAA 452 583 408 Antisense
Sequence Source Affymetrix Proprietary Database