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[177189_at]

Description 3R5.1 /REP_DB=WormBase Gene ID /WP=CE24758 /TR=Q9XWB2 /GB=CAB76729.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      6grp_highest_nonorm > 91      6grp_total > 86      4grp_total > 18      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 132
(-1.7)
P 		114.4
(-2.5)
A 		103.4
(-3)
A 		236.1
(3)
P 		133
B 100.3
(-3)
P 		157.9
(0)
A 		136.8
(-1.1)
M 		214.5
(3)
P 		114
C 117.3
(-3)
A 		154.5
(-0.9)
A 		130.7
(-2.2)
M 		221.4
(3)
P 		104
avr 116.5
(-3) 		142.3
(-1.6) 		123.6
(-2.6) 		224
(3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 168.8
(-1.6)
P 		120.5
(-3)
P 		186.3
(-1.1)
P 		180.7
(-1.2)
P 		202.2
(-0.6)
P 		323.6
(3)
P 		203
B 122.3
(-3)
P 		185.3
(-0.1)
P 		182.4
(-0.2)
P 		181.1
(-0.3)
P 		250.6
(3)
P 		249.9
(3)
P 		128
C 67.7
(-3)
P 		111.1
(-2.1)
P 		122.7
(-1.8)
P 		226.9
(0.4)
P 		197
(-0.2)
P 		349
(3)
P 		281
avr 119.6
(-3) 		139
(-2.4) 		163.8
(-1.6) 		196.2
(-0.6) 		216.6
(0.1) 		307.5
(3) 		188
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 48.1
(3)
P 		24.8
(-3)
A 		27
(-2.4)
A 		34.6
(-0.5)
P 		23
B 32
(-2.9)
P 		39
(0.1)
A 		31.7
(-3)
M 		45.7
(3)
P 		14
C 38.8
(-1.9)
A 		44.4
(2.1)
A 		45.6
(3)
M 		37.3
(-3)
P 		8
avr 39.6
(3) 		36.1
(-1.4) 		34.8
(-3) 		39.2
(2.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 31.1
(-3)
P 		42.8
(-1.5)
P 		40.6
(-1.8)
P 		45.8
(-1.2)
P 		61
(0.8)
P 		78.8
(3)
P 		48
B 42.5
(-3)
P 		61.7
(-1.1)
P 		44.3
(-2.8)
P 		48
(-2.4)
P 		101.8
(3)
P 		93.2
(2.1)
P 		59
C 25.1
(-3)
P 		33.9
(-2.4)
P 		31.2
(-2.6)
P 		45.6
(-1.7)
P 		63.7
(-0.5)
P 		116.8
(3)
P 		92
avr 32.9
(-3) 		46.1
(-1.8) 		38.7
(-2.5) 		46.5
(-1.7) 		75.5
(1) 		96.3
(3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177189_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7046
Sequence Type Exemplar sequence
Representative Public ID 3R5.1 NCBI
Target Description 3R5.1 /REP_DB=WormBase Gene ID /WP=CE24758 /TR=Q9XWB2 /GB=CAB76729.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067447(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067447 NCBI Caenorhabditis elegans 3R5.1 (3R5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000000317 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13779864:13780487:1 9/11 None
3R5.1 ENSEMBL cdna:known chromosome:CEL140:III:13779744:13780487:1 gene:3R5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000315 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13779739-13780483(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl 3R5.1
Entrez Gene 181793 Entrez gene
SwissProt Q9XWB2 EMBL-EBI
WormBase CE24758 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21777 Hypothetical protein 3R5.1 [Caenorhabditis elegans] emb|CAB76729.1| Hypothetical protein 3R5.1 [Caenorhabditis elegans] ref|NP_499848.1| 3R5.1 [Caenorhabditis elegans] 1.0E-123
blast CAA21777 Hypothetical protein 3R5.1 [Caenorhabditis elegans] emb|CAB76729.1| Hypothetical protein 3R5.1 [Caenorhabditis elegans] ref|NP_499848.1| 3R5.1 [Caenorhabditis elegans] 2.0E-98
blast CAB05525 Hypothetical protein F57C2.3 [Caenorhabditis elegans] ref|NP_497017.1| F57C2.3 [Caenorhabditis elegans] 4.0E-81
blast CAD30439 Hypothetical protein F39H2.5 [Caenorhabditis elegans] ref|NP_740895.1| F39H2.5 [Caenorhabditis elegans] 3.0E-71
blast CAB05525 Hypothetical protein F57C2.3 [Caenorhabditis elegans] ref|NP_497017.1| F57C2.3 [Caenorhabditis elegans] 6.0E-65
blast CAD30439 Hypothetical protein F39H2.5 [Caenorhabditis elegans] ref|NP_740895.1| F39H2.5 [Caenorhabditis elegans] 3.0E-54
Sequence
Target Sequence 
>C. ELEGANS:177189_AT
tgtcgtcttgctgttgcttgtaaattccaagatgatcgatattataagctttttcaccaa
tattttgatctactggcccaagttcactctgttgtcgaaacaatggacggtttatggatg
ctgagagtgtggagggctcaaaaattcggaccagaaagcatcaaagagagacgagaaaga
caactatttcacgttactcaattttccttcaaacgttacatcgttccgccgaatccgcgt
attggaaaagccattgaagaatttgggaaagaatatctgattgagatcaatgtttacgac
gagcatcgagctgatttagtgagtctaaattccggtaatttcgtggctattcaaaatgtg
cacgcagcgtccacaccacatagagaaattcaaattcttcacggcggcggtgaggcatat
caacgtggaatctcgacagttccagtcgacttcgaagttgatgcttttcaaaatttcaag
agaaaggtggaatctgtgctggaaaatgttttgtacgatgaaaatttcatcgagttccaa
cagccggaagaagttactgaaaatcgtgttcctgaagagcctcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCGTCTTGCTGTTGCTTGTAAAT 418 557 31 Antisense
TTGATCTACTGGCCCAAGTTCACTC 35 705 95 Antisense
TTCACGTTACTCAATTTTCCTTCAA 300 685 218 Antisense
TCAAACGTTACATCGTTCCGCCGAA 210 629 239 Antisense
TTCCGCCGAATCCGCGTATTGGAAA 311 697 254 Antisense
ATTCCGGTAATTTCGTGGCTATTCA 164 9 359 Antisense
CAAAATGTGCACGCAGCGTCCACAC 266 191 382 Antisense
CAGCGTCCACACCACATAGAGAAAT 281 203 395 Antisense
GAAATTCAAATTCTTCACGGCGGCG 238 363 415 Antisense
GCGGCGGTGAGGCATATCAACGTGG 293 293 434 Antisense
AATCGTGTTCCTGAAGAGCCTCAAT 266 167 592 Antisense
Sequence Source Affymetrix Proprietary Database