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[177187_at]

Description Y46C8AR.A /REP_DB=WormBase Gene ID /WP=CE21958 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60607.1
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      6grp_highest_nonorm > 62      6grp_total > 41      4grp_total > 53      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1493
1 2 3 4 range
A 1309.3
(3)
P 		727.9
(0.3)
P 		714.6
(0.3)
P 		1.1
(-3)
A 		1308
B 1188.5
(3)
P 		755.5
(0.8)
P 		509.5
(-0.5)
P 		22.6
(-3)
A 		1166
C 1494.1
(3)
P 		666.3
(-0.3)
P 		805.9
(0.2)
P 		6
(-3)
A 		1488
avr 1330.6
(3) 		716.6
(0.2) 		676.7
(0) 		9.9
(-3) 		1321

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 525
1 2 3 4 5 6 range
A 385.7
(-1.2)
P 		462.2
(-0.2)
P 		722.2
(3)
P 		541.7
(0.7)
P 		302
(-2.2)
P 		241.5
(-3)
P 		481
B 495.9
(-0.4)
P 		621.2
(1.2)
P 		766.8
(3)
P 		542.8
(0.2)
P 		375.9
(-1.9)
P 		284.8
(-3)
P 		482
C 645.3
(2.2)
P 		465.5
(-0.8)
P 		628.9
(1.9)
P 		693
(3)
P 		433.7
(-1.4)
P 		336.5
(-3)
P 		357
avr 509
(0.2) 		516.3
(0.3) 		706
(3) 		592.5
(1.4) 		370.5
(-1.8) 		287.6
(-3) 		418
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 494
1 2 3 4 range
A 476.7
(3)
P 		158
(-1)
P 		186.8
(-0.7)
P 		0.2
(-3)
A 		477
B 379
(3)
P 		186.6
(-0.1)
P 		118.1
(-1.2)
P 		4.8
(-3)
A 		374
C 494.6
(3)
P 		191.6
(-0.7)
P 		280.9
(0.4)
P 		1
(-3)
A 		494
avr 450.1
(3) 		178.7
(-0.6) 		195.3
(-0.4) 		2
(-3) 		448

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 71.1
(-2.3)
P 		164.4
(3)
P 		157.3
(2.6)
P 		137.4
(1.5)
P 		91.1
(-1.2)
P 		58.8
(-3)
P 		106
B 172.5
(1)
P 		206.8
(3)
P 		186.2
(1.8)
P 		143.8
(-0.8)
P 		152.7
(-0.2)
P 		106.2
(-3)
P 		101
C 239.2
(3)
P 		142
(-1.6)
P 		160.1
(-0.7)
P 		139.4
(-1.7)
P 		140.3
(-1.7)
P 		112.6
(-3)
P 		127
avr 160.9
(2.2) 		171.1
(3) 		167.9
(2.8) 		140.2
(0.6) 		128
(-0.3) 		92.5
(-3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177187_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19384
Sequence Type Exemplar sequence
Representative Public ID Y46C8AR.A NCBI
Target Description Y46C8AR.A /REP_DB=WormBase Gene ID /WP=CE21958 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60607.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068048(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068048 NCBI Caenorhabditis elegans Y46C8AR.1 (Y46C8AR.1) mRNA, complete cds. 11/11 None
GENEFINDER00000012738 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3968069:3968826:1 11/11 None
Y46C8AR.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:3965240:3969019:1 gene:Y46C8AR.1 11/11 None
Y46C8AR.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:3965326:3968867:1 gene:Y46C8AR.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012735 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3968086-3968832(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46C8AR.1
Entrez Gene 189950 Entrez gene
SwissProt Q9N3V9 EMBL-EBI
WormBase CE31650 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500449 Y46C8AR.1 [Caenorhabditis elegans] gb|AAF60607.2| Hypothetical protein Y46C8AR.1 [Caenorhabditis elegans] 0.0
blast AAF60602 Hypothetical protein Y46C8AL.5 [Caenorhabditis elegans] ref|NP_500442.3| Y46C8AL.5 [Caenorhabditis elegans] 1.0E-138
blast AAN73861 Hypothetical protein F56D6.2 [Caenorhabditis elegans] ref|NP_500437.2| F56D6.2 [Caenorhabditis elegans] 1.0E-136
blast NP_500449 Y46C8AR.1 [Caenorhabditis elegans] gb|AAF60607.2| Hypothetical protein Y46C8AR.1 [Caenorhabditis elegans] 7.0E-59
Sequence
Target Sequence 
>C. ELEGANS:177187_AT
gcaatatatgctgacaatcccaaagtatcaggacaaggatctcaaacactcgcttcaatg
tccgtaccagccgatgctccggtcaacactactcaatctgtactcctacactggtatagt
ccatattctagatactcgagcacagcgagtgtgcacgggttatcttttgaaactaataat
aatggcgcaaattcggaaatacttgatgcggcaatatacaatgtgacattggactttgtt
tatttcactagtgaaactatgcaaatcagattttacggaacctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATATATGCTGACAATCCCAAAG 643 321 34 Antisense
AGGACAAGGATCTCAAACACTCGCT 221 55 63 Antisense
TCAAACACTCGCTTCAATGTCCGTA 552 627 75 Antisense
TCCGGTCAACACTACTCAATCTGTA 254 595 111 Antisense
ACTACTCAATCTGTACTCCTACACT 559 101 121 Antisense
ACTCCTACACTGGTATAGTCCATAT 474 99 135 Antisense
ATATTCTAGATACTCGAGCACAGCG 706 17 156 Antisense
GAGTGTGCACGGGTTATCTTTTGAA 426 401 180 Antisense
AATTCGGAAATACTTGATGCGGCAA 251 177 223 Antisense
CATTGGACTTTGTTTATTTCACTAG 323 217 260 Antisense
GCAAATCAGATTTTACGGAACCTCT 378 317 294 Antisense
Sequence Source Affymetrix Proprietary Database