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[177183_s_at]

Description Y73B6BL.E /REP_DB=WormBase Gene ID /WP=CE26278 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23464.1
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_high_8_8 > 50      6grp_highest_nonorm > 15      6grp_total > 31      4grp_total > 62      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7133
1 2 3 4 range
A 6834.2
(3)
P 		4598.2
(1)
P 		3796.5
(0.3)
P 		201.3
(-3)
M 		6633
B 7328.3
(3)
P 		3938.9
(0.1)
P 		3807.4
(0)
P 		227.5
(-3)
P 		7101
C 6847.7
(3)
P 		4077.2
(0.5)
P 		4040.3
(0.5)
P 		195.7
(-3)
P 		6652
avr 7003.4
(3) 		4204.8
(0.5) 		3881.4
(0.2) 		208.2
(-3) 		6795

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5401
1 2 3 4 5 6 range
A 5863.3
(2.2)
P 		6501.1
(3)
P 		6439.9
(2.9)
P 		5496.7
(1.7)
P 		3273.5
(-1.1)
P 		1756.7
(-3)
P 		4744
B 5360.9
(1.2)
P 		6089.7
(2)
P 		6945.5
(3)
P 		4502.9
(0.2)
P 		3587.2
(-0.8)
P 		1687.6
(-3)
P 		5258
C 4470.8
(-0.1)
P 		6015
(1.7)
P 		7088.8
(3)
P 		5638.1
(1.3)
P 		3016
(-1.8)
P 		1993.4
(-3)
P 		5095
avr 5231.7
(1.1) 		6201.9
(2.3) 		6824.7
(3) 		5212.6
(1.1) 		3292.2
(-1.2) 		1812.6
(-3) 		5012
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2459
1 2 3 4 range
A 2488.3
(3)
P 		998.2
(-0.6)
P 		992.5
(-0.7)
P 		29.5
(-3)
M 		2459
B 2336.9
(3)
P 		972.8
(-0.6)
P 		882.3
(-0.8)
P 		48.5
(-3)
P 		2288
C 2266.8
(3)
P 		1172.2
(0.1)
P 		1408.2
(0.7)
P 		33
(-3)
P 		2234
avr 2364
(3) 		1047.7
(-0.4) 		1094.3
(-0.3) 		37
(-3) 		2327

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1884
1 2 3 4 5 6 range
A 1080.9
(-0.9)
P 		2312.1
(3)
P 		1402.5
(0.1)
P 		1394.1
(0.1)
P 		987.8
(-1.2)
P 		427.7
(-3)
P 		1884
B 1865.3
(2.3)
P 		2027
(3)
P 		1686.6
(1.5)
P 		1192.7
(-0.6)
P 		1457.4
(0.6)
P 		629.3
(-3)
P 		1398
C 1657.1
(2.1)
P 		1835.4
(3)
P 		1804.2
(2.8)
P 		1133.8
(-0.6)
P 		975.9
(-1.4)
P 		667.3
(-3)
P 		1168
avr 1534.4
(0.9) 		2058.2
(3) 		1631.1
(1.3) 		1240.2
(-0.3) 		1140.4
(-0.7) 		574.8
(-3) 		1483
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177183_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19364
Sequence Type Exemplar sequence
Representative Public ID Y73B6BL.E NCBI
Target Description Y73B6BL.E /REP_DB=WormBase Gene ID /WP=CE26278 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23464.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068581(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068581 NCBI Caenorhabditis elegans Y73B6BL.24 (Y73B6BL.24) mRNA, complete cds. 11/11 None
SNAP00000032060 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6424667:6426121:-1 11/11 None
GENEFINDER00000032098 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6424667:6426121:-1 11/11 None
Y73B6BL.24.1 ENSEMBL cdna:known chromosome:CEL140:IV:6424585:6426125:-1 gene:Y73B6BL.24 11/11 None
Y73B6BL.24.2 ENSEMBL cdna:known chromosome:CEL140:IV:6424585:6426121:-1 gene:Y73B6BL.24 11/11 None
Y73B6BL.24.3 ENSEMBL cdna:known chromosome:CEL140:IV:6424585:6426123:-1 gene:Y73B6BL.24 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6424672-6427228(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B6BL.24
Entrez Gene 177407 Entrez gene
SwissProt Q9GUF2 EMBL-EBI
WormBase CE29924 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23464 Hypothetical protein Y73B6BL.24 [Caenorhabditis elegans] ref|NP_500982.2| Y73B6BL.24 [Caenorhabditis elegans] 0.0
blast CAE61542 Hypothetical protein CBG05448 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177183_S_AT
aatacttctctgacaacaccaaatggaacatggagaatctgggaaaagctgctgatttgg
ccgataatctcattgaaattgatctctacaaggctgaatatccatcatggattaaggctc
caaagttgaaaggatacactttcgagaagctgaaggctaagattctggaatttgctgaag
ttcatcagaacgcttgtgcagagtacggaccatgcggaaacttgatggctggatattggc
ttcagaatttgattgataaggttgctgatgctaacgctggaaagggaccacaagttattg
gatacgcttctgtaagttatttacaacctgtcaatattaatcacaccgaaatcactcttt
ccgtcatgaaattgatgggatacgtgaaggatgaactgaccacctccgctggattcgtag
ttgaatttaaacgtcttccaaaaccagctgtccgtcttctcaaccatgatcctaacccaa
tcgatgatcatgtcatctatccagctgaacttactccaaaactta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACTTCTCTGACAACACCAAATG 697 171 701 Antisense
GGAAAAGCTGCTGATTTGGCCGATA 120 529 742 Antisense
GAACGCTTGTGCAGAGTACGGACCA 266 347 888 Antisense
AAGGTTGCTGATGCTAACGCTGGAA 454 159 958 Antisense
GAAATCACTCTTTCCGTCATGAAAT 375 363 1048 Antisense
GTGAAGGATGAACTGACCACCTCCG 269 479 1084 Antisense
CACCTCCGCTGGATTCGTAGTTGAA 10 201 1101 Antisense
TAAACGTCTTCCAAAACCAGCTGTC 576 639 1128 Antisense
TCAACCATGATCCTAACCCAATCGA 697 631 1160 Antisense
GATCATGTCATCTATCCAGCTGAAC 391 419 1186 Antisense
CCAGCTGAACTTACTCCAAAACTTA 385 273 1201 Antisense
Sequence Source Affymetrix Proprietary Database