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[177181_at]

Description Y61A9LA.L /REP_DB=WormBase Gene ID /WP=CE25525 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60844.1
Cluster 6grp_high1_10_10 > 09      6grp_total > 39      4grp_total > 31      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 287.5
(3)
P 		109.1
(-3)
A 		124.5
(-2.5)
A 		181.5
(-0.6)
P 		178
B 222.6
(3)
P 		134.7
(-1.1)
P 		93.5
(-3)
A 		141
(-0.8)
P 		129
C 256.9
(3)
P 		102.5
(-3)
A 		142.2
(-1.5)
A 		236.3
(2.2)
P 		154
avr 255.7
(3) 		115.4
(-3) 		120.1
(-2.8) 		186.3
(0) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 171.6
(0.4)
P 		228.9
(3)
P 		96.8
(-3)
P 		216.7
(2.4)
P 		198.3
(1.6)
P 		209
(2.1)
P 		132
B 247.2
(2.1)
P 		225.1
(1.2)
P 		111.1
(-3)
A 		243.4
(1.9)
P 		272.4
(3)
P 		142.7
(-1.8)
P 		161
C 258
(3)
P 		178.2
(-2.4)
P 		248.5
(2.4)
P 		168.9
(-3)
P 		168.6
(-3)
P 		233
(1.3)
P 		89
avr 225.6
(3) 		210.7
(1.8) 		152.1
(-3) 		209.7
(1.7) 		213.1
(2) 		194.9
(0.5) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 104.7
(3)
P 		23.7
(-3)
A 		32.5
(-2.3)
A 		26.6
(-2.8)
P 		81
B 71
(3)
P 		33.3
(-1.6)
P 		21.7
(-3)
A 		30.1
(-2)
P 		49
C 85.1
(3)
P 		29.5
(-3)
A 		49.6
(-0.8)
A 		39.8
(-1.9)
P 		56
avr 86.9
(3) 		28.8
(-3) 		34.6
(-2.4) 		32.2
(-2.6) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 31.6
(-2)
P 		81.4
(3)
P 		21.1
(-3)
P 		55
(0.4)
P 		59.8
(0.9)
P 		50.9
(-0)
P 		60
B 86
(1.2)
P 		74.9
(0.4)
P 		27
(-3)
A 		64.5
(-0.3)
P 		110.7
(3)
P 		53.2
(-1.1)
P 		84
C 95.6
(3)
P 		54.4
(-1)
P 		63.2
(-0.2)
P 		34
(-3)
P 		54.6
(-1)
P 		78
(1.3)
P 		62
avr 71.1
(2.4) 		70.2
(2.2) 		37.1
(-3) 		51.2
(-0.8) 		75
(3) 		60.7
(0.7) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177181_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19536
Sequence Type Exemplar sequence
Representative Public ID Y61A9LA.L NCBI
Target Description Y61A9LA.L /REP_DB=WormBase Gene ID /WP=CE25525 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60844.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071839
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000010100 ENSEMBL cdna:SNAP chromosome:CEL140:V:4582108:4584894:1 11/11 None
GENEFINDER00000010108 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4581930:4584894:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071839 8/11 Cross Hyb Matching Probes None
Y61A9LA.3b 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4581699-4584894(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60844 Hypothetical protein Y61A9LA.3b [Caenorhabditis elegans] ref|NP_504240.2| Y61A9LA.3b [Caenorhabditis elegans] 3.0E-90
blast AAF60844 Hypothetical protein Y61A9LA.3b [Caenorhabditis elegans] ref|NP_504240.2| Y61A9LA.3b [Caenorhabditis elegans] 4.0E-90
blast CAE64151 Hypothetical protein CBG08769 [Caenorhabditis briggsae] 2.0E-47
Sequence
Target Sequence 
>C. ELEGANS:177181_AT
gctcaaaccccctgtgaatcagaattttcctcccgatgaaaagcaaattgatgaagtatt
gaaacggaccaacggaatatttcaaaaaatttcagaaattctcaagacaccccttcttgc
cactgttgaccgtcggaacattgacaattcgacgtgcctattcacctacctgcaaggatt
tccgtgggcgttgactggaggaatggtcgcgttggatacaatggatattaataaaccacc
gcctccccaagccatctatcaagccgcgcggattcagtttttccagtcccttcacactct
cattccgccaccgatttttggaaaaatgcgcaaatgtgtggattcgggcaatgatatgga
ttggtgcatgcaagtcatttccagtgatgattttcgagagattcttcaacgagtggttgc
atcgaaaataaatccgatctactcaattctgtggtccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAAACCCCCTGTGAATCAGAAT 101 299 363 Antisense
GAATCAGAATTTTCCTCCCGATGAA 563 327 378 Antisense
GCCACTGTTGACCGTCGGAACATTG 415 279 481 Antisense
TTGACAATTCGACGTGCCTATTCAC 281 701 503 Antisense
TCACCTACCTGCAAGGATTTCCGTG 680 625 524 Antisense
GATTTCCGTGGGCGTTGACTGGAGG 10 427 539 Antisense
GGAGGAATGGTCGCGTTGGATACAA 378 515 559 Antisense
TCAAGCCGCGCGGATTCAGTTTTTC 677 629 621 Antisense
TCATTCCGCCACCGATTTTTGGAAA 608 617 662 Antisense
GGTGCATGCAAGTCATTTCCAGTGA 509 501 725 Antisense
CGATCTACTCAATTCTGTGGTCCAC 125 249 797 Antisense
Sequence Source Affymetrix Proprietary Database