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[177178_at]

Description Y71H2AL.E /REP_DB=WormBase Gene ID /WP=CE25581 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60874.1
Cluster 6grp_total > 44      4grp_total > 37      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 46.7
(3)
A 		11.3
(-2.9)
A 		10.6
(-3)
A 		16.7
(-2)
A 		36
B 9.1
(3)
A 		4.6
(-2)
A 		3.7
(-3)
A 		3.7
(-3)
A 		5
C 8
(-2.5)
A 		43.8
(3)
A 		4.4
(-3)
A 		8.3
(-2.4)
A 		39
avr 21.3
(3) 		19.9
(2.4) 		6.2
(-3) 		9.6
(-1.6) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 4.5
(-2.5)
A 		6.6
(-2.1)
A 		1.6
(-3)
A 		3
(-2.7)
A 		8
(-1.8)
A 		33.5
(3)
A 		32
B 12.3
(3)
A 		2.2
(-3)
A 		7.6
(0.2)
A 		2.5
(-2.8)
A 		4.1
(-1.9)
A 		5.7
(-0.9)
A 		10
C 32.8
(0.7)
A 		4.7
(-2.8)
A 		51.4
(3)
A 		3.5
(-2.9)
A 		21.3
(-0.7)
A 		3
(-3)
A 		48
avr 16.5
(1.7) 		4.5
(-2.5) 		20.2
(3) 		3
(-3) 		11.1
(-0.2) 		14.1
(0.9) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17
(3)
A 		2.4
(-3)
A 		2.8
(-2.8)
A 		2.4
(-3)
A 		15
B 2.9
(3)
A 		1.1
(-2.1)
A 		0.9
(-2.7)
A 		0.8
(-3)
A 		2
C 2.7
(-2.3)
A 		12.6
(3)
A 		1.5
(-2.9)
A 		1.4
(-3)
A 		11
avr 7.5
(3) 		5.4
(0.9) 		1.7
(-2.8) 		1.5
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.8
(-2.6)
A 		2.3
(-1.5)
A 		0.3
(-3)
A 		0.8
(-2.6)
A 		2.4
(-1.4)
A 		8.2
(3)
A 		8
B 4.3
(3)
A 		0.7
(-3)
A 		1.8
(-1.2)
A 		0.7
(-3)
A 		1.7
(-1.3)
A 		2.1
(-0.7)
A 		4
C 12.2
(2.6)
A 		1.4
(-2.7)
A 		13.1
(3)
A 		0.7
(-3)
A 		6.9
(0)
A 		1
(-2.9)
A 		12
avr 5.8
(3) 		1.5
(-2.1) 		5.1
(2.2) 		0.7
(-3) 		3.7
(0.5) 		3.8
(0.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177178_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18941
Sequence Type Exemplar sequence
Representative Public ID Y71H2AL.E NCBI
Target Description Y71H2AL.E /REP_DB=WormBase Gene ID /WP=CE25581 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60874.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y71H2AL.E
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y71H2AL.E Y71H2AL.E /REP_DB=WormBase Gene ID /WP=CE25581 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60874.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027469 10/11 Negative Strand Matching Probes None
NM_001027470 10/11 Negative Strand Matching Probes None
SNAP00000036787 10/11 Negative Strand Matching Probes None
H19M22.2b.2 10/11 Negative Strand Matching Probes None
H19M22.2a 10/11 Negative Strand Matching Probes A 
H19M22.2b.1 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2672184-2673737(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:177178_AT
accttcaagttatcatgtcctgcagagagaagcttcaagcttccacccaaaagttccttg
gctcctgtctgaacctcattacatcctccgagctgcttcagcttgtaggttatatcaact
ccatagttccacttctgatccttgtccggcagctcccaggtgacaagagcctctcttgga
ccctttggctcaacggtgacgaagatctctccaggaagcgactgagttgtgatactgaca
cgatcgctccacctggaagcttgtggttttccagagtcttcgacagtctgagttctgatc
ttgacatcccacttggttcccggctgagttggaacaataagctccgatggtgcatcagta
ctgacggtccagtttccacgagacgtggtgttaacaaagtcgatgaggtattcaacgttg
tcgcatctccaagtgctctcctctggtggcgtccaggctctctggtggagcttcaggctt
tccacatgaagttgtctcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTTCAAGTTATCATGTCCTGCAG 431 87 149 Antisense
CACCCAAAAGTTCCTTGGCTCCTGT 206 145 192 Antisense
TCAACTCCATAGTTCCACTTCTGAT 373 631 263 Antisense
TCAACGGTGACGAAGATCTCTCCAG 436 629 338 Antisense
TGTGATACTGACACGATCGCTCCAC 419 555 376 Antisense
ATCGCTCCACCTGGAAGCTTGTGGT 609 37 391 Antisense
GGTTTTCCAGAGTCTTCGACAGTCT 363 505 413 Antisense
CTGAGTTCTGATCTTGACATCCCAC 107 239 436 Antisense
CAGTACTGACGGTCCAGTTTCCACG 509 205 504 Antisense
TCAACGTTGTCGCATCTCCAAGTGC 282 631 560 Antisense
GGCTTTCCACATGAAGTTGTCTCCT 463 537 624 Antisense
Sequence Source Affymetrix Proprietary Database