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[177176_s_at]

Description Y61A9LA.D /REP_DB=WormBase Gene ID /WP=CE22673 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60836.1
Cluster 6grp_total > 92      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 95.4
(2.1)
A 		23
(-3)
A 		76.4
(0.7)
A 		108.8
(3)
A 		86
B 53.4
(0)
A 		23.1
(-3)
A 		82.9
(3)
A 		50.8
(-0.2)
A 		60
C 20.7
(-2.7)
A 		16.5
(-3)
A 		17.8
(-2.9)
A 		88.6
(3)
A 		72
avr 56.5
(0.5) 		20.9
(-3) 		59
(0.7) 		82.7
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 60.2
(-0.7)
A 		30.3
(-2.7)
A 		26.1
(-3)
A 		45.2
(-1.7)
A 		113.9
(3)
A 		55.2
(-1)
A 		88
B 19.3
(-3)
A 		84.1
(3)
A 		19.2
(-3)
A 		53.9
(0.2)
A 		82.3
(2.8)
A 		69
(1.6)
A 		65
C 15
(-2.9)
A 		70
(2.6)
A 		17.3
(-2.7)
A 		73.9
(3)
A 		19.7
(-2.4)
A 		14.2
(-3)
A 		60
avr 31.5
(-1.8) 		61.5
(1.8) 		20.9
(-3) 		57.7
(1.3) 		72
(3) 		46.1
(-0) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 34.7
(3)
A 		5
(-3)
A 		20
(0)
A 		15.9
(-0.8)
A 		30
B 17
(2)
A 		5.7
(-3)
A 		19.2
(3)
A 		10.8
(-0.7)
A 		14
C 6.8
(-1.8)
A 		4.7
(-3)
A 		6.2
(-2.1)
A 		14.9
(3)
A 		10
avr 19.5
(3) 		5.1
(-3) 		15.1
(1.2) 		13.9
(0.7) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 11.1
(-1.9)
A 		10.8
(-1.9)
A 		5.7
(-3)
A 		11.5
(-1.8)
A 		34.4
(3)
A 		13.4
(-1.4)
A 		29
B 6.7
(-2.6)
A 		28
(1.9)
A 		4.7
(-3)
A 		14.3
(-1)
A 		33.4
(3)
A 		25.7
(1.4)
A 		29
C 5.6
(-2.6)
A 		21.4
(3)
A 		4.4
(-3)
A 		14.9
(0.7)
A 		6.4
(-2.3)
A 		4.7
(-2.9)
A 		17
avr 7.8
(-2.1) 		20.1
(1.6) 		4.9
(-3) 		13.6
(-0.4) 		24.7
(3) 		14.6
(-0.1) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177176_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19528
Sequence Type Exemplar sequence
Representative Public ID Y61A9LA.D NCBI
Target Description Y61A9LA.D /REP_DB=WormBase Gene ID /WP=CE22673 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60836.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071841(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071841 NCBI Caenorhabditis elegans Y61A9LA.9 (Y61A9LA.9) mRNA, complete cds. 11/11 A 
SNAP00000005511 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1577198:1586855:1 11/11 None
SNAP00000010098 ENSEMBL cdna:SNAP chromosome:CEL140:V:4572947:4579544:-1 11/11 None
GENEFINDER00000010109 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4572947:4573738:-1 11/11 None
Y61A9LA.9 ENSEMBL cdna:known chromosome:CEL140:V:4572947:4573738:-1 gene:Y61A9LA.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1586038-1586731(+) 86.87 86.87
chrV:4572946-4573738(-) 80.68 100.0
Public Domain and Genome References
Gene Title
Ensembl Y61A9LA.9
Entrez Gene 190447 Entrez gene
SwissProt Q9N312 EMBL-EBI
WormBase CE22673 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60836 Hypothetical protein Y61A9LA.9 [Caenorhabditis elegans] ref|NP_504242.1| Y61A9LA.9 [Caenorhabditis elegans] 1.0E-115
blast AAF60836 Hypothetical protein Y61A9LA.9 [Caenorhabditis elegans] ref|NP_504242.1| Y61A9LA.9 [Caenorhabditis elegans] 3.0E-95
blast AAK68464 Hypothetical protein Y41D4B.14 [Caenorhabditis elegans] ref|NP_500103.1| Y41D4B.14 [Caenorhabditis elegans] 1.0E-33
blast AAG23472 Hypothetical protein Y73B6BL.16 [Caenorhabditis elegans] ref|NP_500972.1| Y73B6BL.16 [Caenorhabditis elegans] 2.0E-27
blast NP_508294 H02F09.4 [Caenorhabditis elegans] 1.0E-17
Sequence
Target Sequence 
>C. ELEGANS:177176_S_AT
aaagacgtgaagcagcagccagcatttccctgtttgagaagaagactcatttcgccgtga
ttgaaaatctaccggatgatggctcggattcacaatccgccaaggataaggtttttctcg
ataatttaattgccgctaatccctccctccctgtacatattcaaactttccgcgtcaaaa
ctcgcaaaccagtcttatcccgcccaacaaaaattcgtttctcttctgaagccgaccgca
attcgttcattttctctttctccaaaactctccgttcgttgcctgatcgccccactaacc
ttccaagacccatccgctgcagacgcgatatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGACGTGAAGCAGCAGCCAGCAT 58 123 434 Antisense
AGCCAGCATTTCCCTGTTTGAGAAG 625 83 450 Antisense
AGAAGACTCATTTCGCCGTGATTGA 289 75 473 Antisense
GATGGCTCGGATTCACAATCCGCCA 40 407 511 Antisense
TAATTTAATTGCCGCTAATCCCTCC 173 633 555 Antisense
TCCCTCCCTGTACATATTCAAACTT 655 595 577 Antisense
CAAACTTTCCGCGTCAAAACTCGCA 597 191 595 Antisense
CAAAACTCGCAAACCAGTCTTATCC 41 191 609 Antisense
CCAACAAAAATTCGTTTCTCTTCTG 91 273 637 Antisense
CCGACCGCAATTCGTTCATTTTCTC 8 265 665 Antisense
CCCATCCGCTGCAGACGCGATATGA 701 255 742 Antisense
Sequence Source Affymetrix Proprietary Database