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[177174_at]

Description R11.3 /REP_DB=WormBase Gene ID /WP=CE12718 /TR=O62345 /GB=CAB04649.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 05      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 15.3
(-2.3)
A 		4.9
(-3)
A 		15
(-2.4)
A 		99.5
(3)
P 		95
B 46.1
(2.8)
M 		14.7
(-3)
A 		22.2
(-1.6)
A 		47.3
(3)
A 		33
C 43.5
(-1.2)
A 		46.5
(3)
A 		42.2
(-3)
A 		42.6
(-2.4)
A 		4
avr 35
(-1.1) 		22
(-3) 		26.5
(-2.3) 		63.1
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 37.5
(2.9)
A 		28
(1.3)
A 		3.1
(-3)
A 		37.4
(2.9)
A 		34.7
(2.4)
A 		38.1
(3)
A 		35
B 9.3
(-3)
A 		37.2
(0.3)
A 		49.6
(1.8)
A 		41
(0.8)
A 		59.5
(3)
A 		41
(0.8)
P 		50
C 4.5
(-3)
A 		22.9
(-0)
A 		8.5
(-2.4)
A 		12.3
(-1.7)
A 		37
(2.3)
A 		41.6
(3)
A 		37
avr 17.1
(-3) 		29.4
(-0.2) 		20.4
(-2.3) 		30.2
(-0) 		43.7
(3) 		40.2
(2.2) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 5.6
(-1)
A 		1.1
(-3)
A 		3.9
(-1.8)
A 		14.6
(3)
P 		14
B 14.7
(3)
M 		3.6
(-3)
A 		5.2
(-2.1)
A 		10.1
(0.5)
A 		11
C 14.4
(2.8)
A 		13.4
(2)
A 		14.7
(3)
A 		7.2
(-3)
A 		8
avr 11.6
(3) 		6
(-3) 		7.9
(-1) 		10.6
(1.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 6.9
(0.8)
A 		10
(2.7)
A 		0.7
(-3)
A 		9.5
(2.4)
A 		10.5
(3)
A 		9.3
(2.3)
A 		10
B 3.2
(-3)
A 		12.4
(-0.4)
A 		12
(-0.5)
A 		10.9
(-0.8)
A 		24.2
(3)
A 		15.3
(0.5)
P 		21
C 1.7
(-3)
A 		7
(-0.4)
A 		2.2
(-2.8)
A 		2.5
(-2.6)
A 		12
(2.1)
A 		13.9
(3)
A 		12
avr 3.9
(-3) 		9.8
(0) 		5
(-2.4) 		7.6
(-1.1) 		15.6
(3) 		12.8
(1.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177174_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17476
Sequence Type Exemplar sequence
Representative Public ID R11.3 NCBI
Target Description R11.3 /REP_DB=WormBase Gene ID /WP=CE12718 /TR=O62345 /GB=CAB04649.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078238(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078238 NCBI Caenorhabditis elegans R11.3 (R11.3) mRNA, complete cds. 11/11 None
R11.3 ENSEMBL cdna:known chromosome:CEL140:X:16196825:16199846:-1 gene:R11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019696 6/11 Cross Hyb Matching Probes None
GENEFINDER00000019699 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16196824-16199846(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11.3
Entrez Gene 187791 Entrez gene
SwissProt O62345 EMBL-EBI
WormBase CE12718 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04649 Hypothetical protein R11.3 [Caenorhabditis elegans] ref|NP_510639.1| R11.3 [Caenorhabditis elegans] 0.0
blast CAE69988 Hypothetical protein CBG16391 [Caenorhabditis briggsae] 4.0E-39
Sequence
Target Sequence 
>C. ELEGANS:177174_AT
tgaaggagcgccccgcaatgtttattgggtacaaaatcaatggtgatactactctcaaca
ttcccgaagttggcttagacttcagcaacattcatccggtaatatgtgtccaccagaaat
gtcatttggaaaataattgtggacatttaactggagattatcgttacatatacatcaaag
tcaacaccgtccatctcggagatccaccactgggcgcccggaacacagttaattttccag
caatgaaactggcatgggctctgagatcccaacttgagtcagaacaagcaccagctgcag
tctttgacccgatggttgtggacaaacaacagaggaagaaataccgtaagaagaagggaa
caaatctggattacaagatgatttgggaggagaagtatctgagatttgtggtcaaagagt
ataagatgaaaaatggtgaagatgagagaatgatggaagctcatctgatgccagaagaag
aaattagtgatactcaaggtgagactaaatgttttaaaatagttggtttttttctaaacc
tgttagttttgaatccgcaacgtttcaaaatcgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGGAGCGCCCCGCAATGTTTAT 266 573 989 Antisense
TGGTGATACTACTCTCAACATTCCC 453 553 1029 Antisense
AACATTCCCGAAGTTGGCTTAGACT 698 135 1045 Antisense
AGACTTCAGCAACATTCATCCGGTA 317 71 1065 Antisense
TCATCCGGTAATATGTGTCCACCAG 392 619 1080 Antisense
TACATCAAAGTCAACACCGTCCATC 276 645 1159 Antisense
GAAACTGGCATGGGCTCTGAGATCC 374 357 1233 Antisense
TGAGATCCCAACTTGAGTCAGAACA 156 559 1250 Antisense
GAACAAGCACCAGCTGCAGTCTTTG 107 353 1270 Antisense
GCAGTCTTTGACCCGATGGTTGTGG 112 313 1285 Antisense
AATCCGCAACGTTTCAAAATCGCTT 685 167 1540 Antisense
Sequence Source Affymetrix Proprietary Database