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[177173_s_at]

Description Y73B6BL.Z /REP_DB=WormBase Gene ID /WP=CE26298 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23484.1
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 47      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 72      6grp_total > 47      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 555
1 2 3 4 range
A 834.6
(2.8)
P 		440.3
(-2.1)
P 		370.6
(-3)
P 		850.9
(3)
P 		480
B 735.1
(0.9)
P 		401.9
(-2.7)
P 		370.3
(-3)
P 		925.4
(3)
P 		555
C 807.2
(2.8)
P 		453.6
(-2.6)
P 		430.8
(-3)
P 		817.2
(3)
P 		386
avr 792.3
(2.1) 		431.9
(-2.5) 		390.6
(-3) 		864.5
(3) 		474

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 449.4
(3)
P 		448.4
(3)
P 		385.6
(-0)
P 		399.2
(0.6)
P 		322.9
(-3)
P 		416
(1.4)
P 		127
B 445.8
(3)
P 		376.8
(-0.2)
P 		426.2
(2.1)
P 		341.2
(-1.8)
P 		315.9
(-3)
P 		421.6
(1.9)
P 		130
C 504.6
(2.6)
P 		370.1
(-3)
P 		403
(-1.6)
P 		411.8
(-1.3)
P 		397.8
(-1.8)
P 		513.4
(3)
P 		143
avr 466.6
(3) 		398.4
(-0.4) 		404.9
(-0.1) 		384.1
(-1.1) 		345.5
(-3) 		450.3
(2.2) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 303.9
(3)
P 		95.6
(-3)
P 		96.9
(-3)
P 		124.6
(-2.2)
P 		208
B 234.4
(3)
P 		99.3
(-2.5)
P 		85.8
(-3)
P 		197.2
(1.5)
P 		149
C 267.2
(3)
P 		130.4
(-3)
P 		150.1
(-2.1)
P 		137.8
(-2.7)
P 		137
avr 268.5
(3) 		108.4
(-3) 		110.9
(-2.9) 		153.2
(-1.3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 82.8
(-3)
P 		159.5
(3)
P 		84
(-2.9)
P 		101.3
(-1.6)
P 		97.4
(-1.9)
P 		101.3
(-1.6)
P 		77
B 155.1
(2.8)
P 		125.4
(0.1)
P 		103.5
(-1.8)
P 		90.4
(-3)
P 		128.4
(0.4)
P 		157.2
(3)
P 		67
C 187
(3)
P 		112.9
(-1.3)
P 		102.6
(-1.9)
P 		82.8
(-3)
P 		128.7
(-0.4)
P 		171.9
(2.1)
P 		104
avr 141.6
(2.8) 		132.6
(1.7) 		96.7
(-2.4) 		91.5
(-3) 		118.2
(0.1) 		143.5
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177173_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19359
Sequence Type Exemplar sequence
Representative Public ID Y73B6BL.Z NCBI
Target Description Y73B6BL.Z /REP_DB=WormBase Gene ID /WP=CE26298 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23484.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068568(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068568 NCBI Caenorhabditis elegans Y73B6BL.4 (Y73B6BL.4) mRNA, complete cds. 11/11 None
SNAP00000032041 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6337639:6339788:1 11/11 None
GENEFINDER00000032077 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6337639:6339788:1 11/11 None
Y73B6BL.4 ENSEMBL cdna:known chromosome:CEL140:IV:6337637:6340111:1 gene:Y73B6BL.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6337644-6339794(+) 99.39 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B6BL.4
Entrez Gene 177396 Entrez gene
SwissProt Q8MXR3 EMBL-EBI
WormBase CE26298 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605523_AT similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma cfa
CANINE_2:CFA.11250.1.A1_AT similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma cfa
CANINE_2:CFA.21125.1.S1_S_AT similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma cfa
CANINE_2:CFAAFFX.6429.1.S1_AT similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma cfa
CANINE_2:CFAAFFX.6431.1.S1_S_AT similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma cfa
CHICKEN:GGA.12661.1.S1_AT similar to calcium-independent phospholipase A2 gga
HG-U133B:223310_X_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HG-U133_PLUS_2:223310_X_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HG-U133_PLUS_2:223982_S_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HG-U133B:223982_S_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HU35KSUBA:HUM_ALU_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HU35KSUBB:HUM_ALU_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HU35KSUBC:HUM_ALU_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HU35KSUBD:HUM_ALU_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HUGENEFL:HUM_ALU_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HC-G110:HUM_ALU_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HU35KSUBC:RC_AA490948_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HU35KSUBC:RC_AA446121_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
U133_X3P:G7688980_3P_X_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
U133_X3P:G7670057_3P_A_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
U133_X3P:HS.44198.1.S1_3P_A_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HG-U133_PLUS_2:223309_X_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HG-U133B:223309_X_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HG-U95B:45597_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HG-U95B:52517_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HG-U95C:55071_AT intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HG-U95B:43672_AT Intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
HU35KSUBB:RC_N66001_AT Intracellular membrane-associated calcium-independent phospholipase A2 gamma hs
MG-U74BV2:111784_AT RIKEN cDNA 1200006O19 gene mm
MG-U74BV2:164677_R_AT RIKEN cDNA 1200006O19 gene mm
MG-U74BV2:162756_AT RIKEN cDNA 1200006O19 gene mm
MOE430A:1417768_AT RIKEN cDNA 1200006O19 gene mm
MOUSE430A_2:1417768_AT RIKEN cDNA 1200006O19 gene mm
MOUSE430_2:1417768_AT RIKEN cDNA 1200006O19 gene mm
MG-U74BV2:108283_AT RIKEN cDNA 1200006O19 gene mm
MG-U74BV2:108261_AT IPLA2-2 mm
MG-U74CV2:166348_R_AT IPLA2-2 mm
MG-U74CV2:170075_AT IPLA2-2 mm
MU19KSUBB:TC32928_AT IPLA2-2 mm
RAE230B:1395725_AT similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma (predicted) rn
RAT230_2:1395725_AT similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma (predicted) rn
RAE230B:1379459_AT similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma (predicted) rn
RAT230_2:1379459_AT similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma (predicted) rn
RAE230A:1372733_AT Similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma (predicted) rn
RAT230_2:1372733_AT Similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma (predicted) rn
RAE230A:1375528_AT Similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma (predicted) rn
RAT230_2:1375528_AT Similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma (predicted) rn
RG-U34B:RC_AA998901_AT Similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma (predicted) rn
RG-U34C:RC_AI175000_AT Similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma (predicted) rn
RG-U34C:RC_AI177164_AT Similar to intracellular membrane-associated calcium-independent phospholipase A2 gamma (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
45735 nutrient reservoir activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAM44394 Hypothetical protein Y73B6BL.4 [Caenorhabditis elegans] ref|NP_500969.1| Y73B6BL.4 [Caenorhabditis elegans] 0.0
blast CAE61569 Hypothetical protein CBG05480 [Caenorhabditis briggsae] emb|CAE61557.1| Hypothetical protein CBG05466 [Caenorhabditis briggsae] 0.0
blast AAT06310 putative calcium-independent phospholipase A2 isoform a [Dictyocaulus viviparus] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 9.5E-43
Sequence
Target Sequence 
>C. ELEGANS:177173_S_AT
cattttccgaaactacgaccatccagctggacgtgattctcattaccgtggtggagccga
tcactgcctatggacagcaattcaagcatctgcagctgctcctttgtatttctcggaagt
caaacttgataatcttcttcttcaagacggcggagtttatgcaaataacccaactgccat
cgcataccatgaagcaaaacttctgtggccagatgagaatgtcaattgtgtagtttcggt
gggaaatggcagaacagtgacatcagttgaaccaacaccaactgtattctccacttcatt
ccaagacaaacttctccgtatcatcgatagtgccactgataccgagggagttcatatgaa
tgttcatgatatgcttccagaatctgtatattatcgattcaatccatacatgacttatgc
ttatggacttgacgaaatcgatcaggagaggctggagcaaatggcaagtgatgctgaatt
ctatgtgagaagaaattcaaacaagttggaagctgcagctgaaagattattgctgcaacc
aaatctccaacaacgtgctcatcggtgtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTTCCGAAACTACGACCATCCA 476 215 1041 Antisense
GACCATCCAGCTGGACGTGATTCTC 524 383 1057 Antisense
GATTCTCATTACCGTGGTGGAGCCG 592 431 1075 Antisense
GCCGATCACTGCCTATGGACAGCAA 538 283 1096 Antisense
AATTCAAGCATCTGCAGCTGCTCCT 175 177 1119 Antisense
GCTGCTCCTTTGTATTTCTCGGAAG 407 297 1135 Antisense
AACTGCCATCGCATACCATGAAGCA 198 143 1212 Antisense
GAACCAACACCAACTGTATTCTCCA 536 345 1309 Antisense
ATTCCAAGACAAACTTCTCCGTATC 479 7 1338 Antisense
GATAGTGCCACTGATACCGAGGGAG 278 425 1366 Antisense
TCCAACAACGTGCTCATCGGTGTGC 536 587 1586 Antisense
Sequence Source Affymetrix Proprietary Database