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[177172_at]

Description Y61A9LA.E /REP_DB=WormBase Gene ID /WP=CE25522 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60837.1
Cluster 4grp_high_8_8 > 47      6grp_total > 34      4grp_total > 41      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 131.4
(-1.9)
M 		162.3
(0.7)
A 		189.1
(3)
P 		118.8
(-3)
P 		70
B 123.8
(-3)
P 		176.5
(3)
P 		159.3
(1)
A 		156.2
(0.7)
P 		53
C 117.1
(-3)
P 		164.8
(3)
A 		129.3
(-1.5)
M 		161.9
(2.6)
A 		48
avr 124.1
(-3) 		167.9
(3) 		159.2
(1.8) 		145.6
(-0.1) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 250.6
(3)
P 		127.2
(-3)
P 		142.5
(-2.2)
A 		126.6
(-3)
A 		151
(-1.8)
M 		144.5
(-2.1)
A 		124
B 126.8
(-0.8)
A 		182.9
(2.4)
A 		193.9
(3)
M 		91.7
(-2.8)
P 		87.4
(-3)
A 		119.2
(-1.2)
P 		107
C 209.1
(3)
P 		125
(-1.8)
M 		149.5
(-0.4)
A 		140.1
(-0.9)
A 		104.4
(-2.9)
P 		103
(-3)
A 		106
avr 195.5
(3) 		145
(-0.7) 		162
(0.5) 		119.5
(-2.6) 		114.3
(-3) 		122.2
(-2.4) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 47.9
(2.7)
M 		35.2
(0.3)
A 		49.4
(3)
P 		17.4
(-3)
P 		32
B 39.5
(0.6)
P 		43.6
(3)
P 		36.9
(-0.9)
A 		33.3
(-3)
P 		10
C 38.8
(0.4)
P 		47.4
(3)
A 		45.1
(2.3)
M 		27.3
(-3)
A 		20
avr 42.1
(2.4) 		42.1
(2.4) 		43.8
(3) 		26
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 46.2
(3)
P 		45.2
(2.6)
P 		31
(-3)
A 		32.1
(-2.6)
A 		45.6
(2.8)
M 		35.2
(-1.3)
A 		15
B 44.1
(0.2)
A 		60.9
(3)
A 		47.1
(0.7)
M 		24.3
(-3)
P 		35.5
(-1.2)
A 		44.5
(0.3)
P 		37
C 77.5
(3)
P 		38.1
(-1.8)
M 		38
(-1.8)
A 		28.2
(-3)
A 		33.8
(-2.3)
P 		34.5
(-2.2)
A 		49
avr 55.9
(3) 		48.1
(1.3) 		38.7
(-0.7) 		28.2
(-3) 		38.3
(-0.8) 		38.1
(-0.9) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177172_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19502
Sequence Type Exemplar sequence
Representative Public ID Y61A9LA.E NCBI
Target Description Y61A9LA.E /REP_DB=WormBase Gene ID /WP=CE25522 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60837.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071838(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071838 NCBI Caenorhabditis elegans Y61A9LA.8 (Y61A9LA.8) mRNA, complete cds. 11/11 None
SNAP00000010096 ENSEMBL cdna:SNAP chromosome:CEL140:V:4562464:4571007:-1 11/11 None
GENEFINDER00000010119 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4562464:4569841:-1 11/11 None
Y61A9LA.8 ENSEMBL cdna:known chromosome:CEL140:V:4561932:4569857:-1 gene:Y61A9LA.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4562463-4571935(-) 93.87 100.0
Public Domain and Genome References
Gene Title
Ensembl Y61A9LA.8
Entrez Gene 178847 Entrez gene
SwissProt Q95XU6 EMBL-EBI
WormBase CE31123 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK70666 Hypothetical protein Y61A9LA.8 [Caenorhabditis elegans] ref|NP_504239.2| Y61A9LA.8 [Caenorhabditis elegans] 0.0
blast CAE56771 Hypothetical protein CBG24575 [Caenorhabditis briggsae] 1.0E-135
blast CAG09129 unnamed protein product [Tetraodon nigroviridis] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:177172_AT
atcccccatgtcgattcgatcgattctgcacaaaaaagcactgtccattcactcatcacg
gtactggaggacaacaacccggaggagcccagctgacttctgaattcaagaatccactca
cttccagcagaatgctaacagttccatctccatttatagcagcaacagcagcagcagtcg
aagaacttccaaaaccagcggctcgcggagctcttggaagtttggctgagaagctggcgg
cttctattaagaaaaagcctgcaccgggggcagaatctgagaaaaaggaggagaaaagcg
atgaaaatgagtcgaaagctgaagagccaaaggctgaagtagctccagtccaacctaaac
cacttccagatattgctccactccattccatggtcctatgccgatacgcaggagcatgca
gaaatccaatttgtcactttaaacatccaaaggaatgccgtttcggtgccaactgccgca
atccgtcatgctatttctaccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCCCCATGTCGATTCGATCGATT 186 39 1907 Antisense
AAAAAAGCACTGTCCATTCACTCAT 666 129 1938 Antisense
AGCCCAGCTGACTTCTGAATTCAAG 322 83 1992 Antisense
TCCACTCACTTCCAGCAGAATGCTA 329 589 2019 Antisense
AACAGTTCCATCTCCATTTATAGCA 482 137 2043 Antisense
AAGCCTGCACCGGGGGCAGAATCTG 345 147 2161 Antisense
AAGGCTGAAGTAGCTCCAGTCCAAC 511 161 2236 Antisense
CCAACCTAAACCACTTCCAGATATT 338 277 2256 Antisense
GGTCCTATGCCGATACGCAGGAGCA 538 499 2298 Antisense
AAGGAATGCCGTTTCGGTGCCAACT 299 161 2356 Antisense
CAATCCGTCATGCTATTTCTACCAT 159 181 2385 Antisense
Sequence Source Affymetrix Proprietary Database