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[177171_s_at]

Description Y45G5AM.A /REP_DB=WormBase Gene ID /WP=CE26398 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23358.1
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 82      6grp_total > 39      4grp_total > 01      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 384.7
(-0.5)
P 		365.3
(-1.5)
P 		336.2
(-3)
P 		450.7
(3)
P 		115
B 362.5
(-0.9)
P 		296.4
(-3)
P 		387.8
(-0)
P 		482
(3)
P 		186
C 374.1
(-1.3)
P 		340
(-3)
P 		377.7
(-1.2)
P 		462.7
(3)
P 		123
avr 373.8
(-1.2) 		333.9
(-3) 		367.2
(-1.5) 		465.1
(3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 427.9
(3)
P 		362.6
(0.3)
P 		282.5
(-3)
P 		396.6
(1.7)
P 		401.8
(1.9)
P 		402.5
(2)
P 		145
B 358.2
(-0.9)
P 		378.7
(0.2)
P 		380.5
(0.3)
P 		320.2
(-3)
P 		403.8
(1.6)
P 		429.8
(3)
P 		110
C 557.1
(3)
P 		334.7
(-2.1)
P 		340.3
(-2)
P 		297.7
(-3)
P 		545.8
(2.7)
P 		394.7
(-0.8)
P 		259
avr 447.7
(2.9) 		358.7
(-1.7) 		334.4
(-3) 		338.2
(-2.8) 		450.5
(3) 		409
(0.9) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 140.1
(3)
P 		79.3
(-1.9)
P 		87.9
(-1.2)
P 		66
(-3)
P 		74
B 115.6
(3)
P 		73.2
(-3)
P 		89.9
(-0.6)
P 		102.7
(1.2)
P 		42
C 123.8
(2.1)
P 		97.8
(-0.8)
P 		131.6
(3)
P 		78
(-3)
P 		54
avr 126.5
(3) 		83.4
(-2.8) 		103.1
(-0.2) 		82.2
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 78.9
(-1.5)
P 		129
(3)
P 		61.5
(-3)
P 		100.6
(0.5)
P 		121.2
(2.3)
P 		98
(0.2)
P 		68
B 124.6
(0)
P 		126.1
(0.1)
P 		92.4
(-2.4)
P 		84.8
(-3)
P 		164.1
(3)
P 		160.3
(2.7)
P 		79
C 206.5
(3)
P 		102.1
(-1.3)
P 		86.6
(-1.9)
P 		59.9
(-3)
P 		176.6
(1.8)
P 		132.1
(-0)
P 		147
avr 136.7
(1.6) 		119.1
(0.2) 		80.2
(-3) 		81.8
(-2.9) 		154
(3) 		130.1
(1.1) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177171_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19539
Sequence Type Exemplar sequence
Representative Public ID Y45G5AM.A NCBI
Target Description Y45G5AM.A /REP_DB=WormBase Gene ID /WP=CE26398 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23358.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y45G5AM.A
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y45G5AM.A Y45G5AM.A /REP_DB=WormBase Gene ID /WP=CE26398 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23358.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071762 6/11 Cross Hyb Matching Probes A 
SNAP00000024448 6/11 Cross Hyb Matching Probes None
GENEFINDER00000024451 5/11 Cross Hyb Matching Probes None
GENEFINDER00000024458 3/11 Cross Hyb Matching Probes None
Y45G5AM.9a 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4181397-4184890(-) 72.7 97.48
Sequence
Target Sequence 
>C. ELEGANS:177171_S_AT
agcttttcaagcactttctcagatgttttggctgaaattaatattatttcccagataaat
caacctaacaagggtctcgccacgaacgaggtactttgtagttcgtttccggcgtggcga
gacccaaaaatgatctttttcagacgtctatgtacactcaaaataaaatttaaaaaatgc
gtggcgtgtactgcagataacctaatatttaggccccgtctttttatcgtccactcacgg
ggaaaaggcaaaattggggaccccaaccagtgtcaggccgccgacatctcacggactccg
cgcgccgctgcgtttaactcgctatgggcgtggcgagctgtctccgcccgctgcgagtta
aacatagcggcgagcggaacccgtgagatgtcggcggctgatattggttggggtcccgaa
ttttgccttttcccaccgaacatatttgaaacgataatgtccactggctcatcatccacg
aataatggccaccactaccgttccactgaagttctttcactggacgcacagaagcttctc
gaaaagctccccgatctacagtatcttcaatcgggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTTTTCAAGCACTTTCTCAGATG 448 79 907 Antisense
AGGGTCTCGCCACGAACGAGGTACT 442 57 977 Antisense
GGCGTGTACTGCAGATAACCTAATA 34 535 1089 Antisense
AATTGGGGACCCCAACCAGTGTCAG 204 171 1158 Antisense
GGCGGCTGATATTGGTTGGGGTCCC 483 539 1299 Antisense
GAAACGATAATGTCCACTGGCTCAT 600 357 1354 Antisense
CCACTGGCTCATCATCCACGAATAA 516 273 1367 Antisense
ACGAATAATGGCCACCACTACCGTT 108 93 1384 Antisense
CACTACCGTTCCACTGAAGTTCTTT 420 165 1399 Antisense
GAAGTTCTTTCACTGGACGCACAGA 400 337 1414 Antisense
GATCTACAGTATCTTCAATCGGGTG 626 415 1459 Antisense
Sequence Source Affymetrix Proprietary Database