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[177170_at]

Description M6.2 /REP_DB=WormBase Gene ID /WP=CE07383 /TR=Q21579 /GB=AAA98707.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 06      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 34.5
(3)
A 		7.4
(-3)
A 		25.3
(1)
A 		26.1
(1.1)
A 		27
B 6.2
(0.8)
A 		5.5
(0)
A 		8
(3)
A 		3
(-3)
A 		5
C 4.4
(-2.8)
A 		5.6
(-2.6)
A 		3
(-3)
A 		44.4
(3)
A 		41
avr 15
(-0.1) 		6.2
(-3) 		12.1
(-1.1) 		24.5
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 972
1 2 3 4 5 6 range
A 46.2
(-2.7)
A 		4.9
(-3)
A 		54
(-2.6)
A 		733.3
(3)
P 		476.7
(0.9)
P 		147.9
(-1.8)
P 		728
B 2.4
(-3)
A 		7
(-3)
A 		7.6
(-2.9)
A 		508.4
(2.2)
P 		582.5
(3)
P 		111
(-1.9)
P 		580
C 2.9
(-3)
A 		49.6
(-2.7)
A 		4.8
(-3)
A 		542.4
(0.3)
P 		974.8
(3)
P 		150.5
(-2.1)
P 		972
avr 17.2
(-3) 		20.5
(-3) 		22.1
(-3) 		594.7
(2.2) 		678
(3) 		136.5
(-1.9) 		661
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.5
(3)
A 		1.6
(-3)
A 		6.6
(-0.2)
A 		3.8
(-1.8)
A 		11
B 2
(3)
A 		1.4
(0.4)
A 		1.9
(2.6)
A 		0.6
(-3)
A 		1
C 1.5
(-2.5)
A 		1.6
(-2.4)
A 		1
(-3)
A 		7.5
(3)
A 		7
avr 5.3
(3) 		1.5
(-3) 		3.2
(-0.3) 		4
(0.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 8.5
(-2.8)
A 		1.7
(-3)
A 		11.8
(-2.7)
A 		186
(3)
P 		143.8
(1.6)
P 		36
(-1.9)
P 		184
B 0.8
(-3)
A 		2.3
(-3)
A 		1.8
(-3)
A 		134.7
(0.4)
P 		236.7
(3)
P 		41.4
(-2)
P 		236
C 1.1
(-3)
A 		15.1
(-2.7)
A 		1.2
(-3)
A 		109.1
(-0.9)
P 		315.4
(3)
P 		50.4
(-2.1)
P 		314
avr 3.5
(-3) 		6.4
(-2.9) 		4.9
(-3) 		143.3
(0.7) 		232
(3) 		42.6
(-2) 		229
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177170_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18098
Sequence Type Exemplar sequence
Representative Public ID M6.2 NCBI
Target Description M6.2 /REP_DB=WormBase Gene ID /WP=CE07383 /TR=Q21579 /GB=AAA98707.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171614, NM_171613
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171613 NCBI Caenorhabditis elegans Intermediate Filament, C family member (ifc-2) (ifc-2) mRNA, complete cds. A 
SNAP00000028056 ENSEMBL cdna:SNAP chromosome:CEL140:X:642213:645671:-1 None
M6.1b ENSEMBL cdna:known chromosome:CEL140:X:642175:650091:-1 gene:M6.1 A 
M6.1a ENSEMBL cdna:known chromosome:CEL140:X:643145:650091:-1 gene:M6.1 A 
NM_171614 NCBI Caenorhabditis elegans Intermediate Filament, C family member (ifc-2) (ifc-2) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:640831-643269(-) 100.0 100.0
Public Domain and Genome References
Ensembl M6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69101 Intermediate filament, c protein 2, isoform b [Caenorhabditis elegans] ref|NP_741705.1| Intermediate Filament, C family member (ifc-2) [Caenorhabditis elegans] 0.0
blast AAM69100 Intermediate filament, c protein 2, isoform a [Caenorhabditis elegans] ref|NP_741706.1| Intermediate Filament, C family member (ifc-2) [Caenorhabditis elegans] 0.0
blast T29185 hypothetical protein M6.1 - Caenorhabditis elegans 0.0
blast Q21067 Intermediate filament protein ifc-2 (Intermediate filament protein C2) (IF-C2) (Cel IF C2) 0.0
blast CAA50184 Cytoplasmic intermediate filament (IF) protein [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001664 EMBL-EBI Intermediate filament protein 1.0E-12
Pfam IPR001664 EMBL-EBI Intermediate filament protein 8.1E-12
Pfam IPR001664 EMBL-EBI Intermediate filament protein 1.0E-12
Pfam IPR001664 EMBL-EBI Intermediate filament protein 8.1E-12
Sequence
Target Sequence 
>C. ELEGANS:177170_AT
ttacaaacccatcaggccgagaacccgattcttatttactggacgatgtgaaactcaaaa
cttttcgattgcattgatttcttcacaagaaatcgccatgttcattgagttcaatcttga
aaatacaaaattggtcagtgctaaatcgttttcaagtaaaacgtggtcaagagaggtcct
tgcaaaaaatccgattcaacaaaatgatacgttcttcattcaaataatcactacaaatga
ccatttcgaggttttctcaggaggaacattcatcttctcattaaagtacactgtcccctt
agagaagatcaccggaattcggctaatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACAAACCCATCAGGCCGAGAACC 71 685 552 Antisense
GAACCCGATTCTTATTTACTGGACG 50 347 572 Antisense
TTTTCGATTGCATTGATTTCTTCAC 534 677 613 Antisense
GAAATCGCCATGTTCATTGAGTTCA 84 363 640 Antisense
GGTCAGTGCTAAATCGTTTTCAAGT 91 503 684 Antisense
GAGGTCCTTGCAAAAAATCCGATTC 475 401 724 Antisense
GACCATTTCGAGGTTTTCTCAGGAG 489 381 790 Antisense
AGGAGGAACATTCATCTTCTCATTA 316 57 810 Antisense
TCTCATTAAAGTACACTGTCCCCTT 94 613 827 Antisense
CTGTCCCCTTAGAGAAGATCACCGG 368 235 842 Antisense
AGATCACCGGAATTCGGCTAATGGA 102 67 857 Antisense
Sequence Source Affymetrix Proprietary Database