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[177169_s_at]

Description Y38C1AA.G /REP_DB=WormBase Gene ID /WP=CE25248 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59468.1
Cluster 6grp_high1_10_10 > 07      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_total > 27      4grp_total > 55      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 141
(3)
P 		100.3
(-3)
P 		109
(-1.7)
P 		118.7
(-0.3)
P 		41
B 120.2
(1.9)
P 		90.6
(-2.4)
P 		128.2
(3)
P 		86.1
(-3)
P 		42
C 182.7
(3)
P 		129.7
(-0.1)
P 		108.3
(-1.3)
P 		79.3
(-3)
P 		103
avr 148
(3) 		106.9
(-1.6) 		115.2
(-0.7) 		94.7
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 119.1
(3)
P 		102.6
(1.7)
P 		96.8
(1.2)
P 		42.9
(-3)
A 		81.7
(0.1)
P 		106.4
(2)
M 		76
B 162.1
(3)
P 		117
(-0.5)
P 		110.7
(-1)
P 		121.3
(-0.2)
P 		84.5
(-3)
P 		97.6
(-2)
P 		78
C 134.3
(3)
P 		124.6
(2.2)
P 		69.8
(-2)
P 		57.4
(-3)
A 		77.7
(-1.4)
P 		95.8
(-0)
P 		77
avr 138.5
(3) 		114.7
(0.8) 		92.4
(-1.3) 		73.9
(-3) 		81.3
(-2.3) 		99.9
(-0.6) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 51.3
(3)
P 		21.8
(-2.2)
P 		28.5
(-1)
P 		17.4
(-3)
P 		34
B 38.3
(3)
P 		22.4
(-1.8)
P 		29.7
(0.4)
P 		18.3
(-3)
P 		20
C 60.5
(3)
P 		37.3
(0)
P 		37.8
(0.1)
P 		13.4
(-3)
P 		47
avr 50
(3) 		27.2
(-1.1) 		32
(-0.2) 		16.4
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 22
(-0.4)
P 		36.5
(3)
P 		21.1
(-0.6)
P 		10.9
(-3)
A 		24.7
(0.2)
P 		25.9
(0.5)
M 		26
B 56.4
(3)
P 		38.9
(-0.6)
P 		26.9
(-3)
P 		32.1
(-1.9)
P 		34.3
(-1.5)
P 		36.4
(-1.1)
P 		30
C 49.8
(3)
P 		38
(1.2)
P 		17.8
(-2)
P 		11.5
(-3)
A 		25.1
(-0.9)
P 		32.1
(0.2)
P 		38
avr 42.7
(3) 		37.8
(1.8) 		21.9
(-2.1) 		18.2
(-3) 		28
(-0.6) 		31.5
(0.3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177169_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19174
Sequence Type Exemplar sequence
Representative Public ID Y38C1AA.G NCBI
Target Description Y38C1AA.G /REP_DB=WormBase Gene ID /WP=CE25248 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59468.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067474(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067474 NCBI Caenorhabditis elegans T Cell Lineage defect family member (tcl-2) (tcl-2) mRNA, complete cds. 11/11 None
SNAP00000038644 ENSEMBL cdna:SNAP chromosome:CEL140:IV:179083:182914:1 11/11 None
GENEFINDER00000038661 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:179083:182914:1 11/11 None
Y38C1AA.4 ENSEMBL cdna:known chromosome:CEL140:IV:179008:183261:1 gene:Y38C1AA.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:179742-182914(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tcl-2
Ensembl Y38C1AA.4
Entrez Gene 176832 Entrez gene
SwissProt Q9N428 EMBL-EBI
WormBase CE31644 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59468 T cell lineage defect protein 2 [Caenorhabditis elegans] ref|NP_499875.2| T Cell Lineage defect family member (tcl-2) [Caenorhabditis elegans] gb|AAN52916.1| TCL-2 [Caenorhabditis elegans] sp|Q9N428|TCL2_CAEEL T-cell defective protein 0.0
blast CAE58509 Hypothetical protein CBG01660 [Caenorhabditis briggsae] 1.0E-121
blast CAE58509 Hypothetical protein CBG01660 [Caenorhabditis briggsae] 1.0E-118
Sequence
Target Sequence 
>C. ELEGANS:177169_S_AT
gagatcttgacactccggcaaaaatcaatgcagcactggaagtgaataatgatgattcaa
tggattattatcaatatgctggaatgattgaaacttcaagctcccttgccacatacacaa
attccacaggccctctcgtcgaaaatcatgccaggaatttgaaaagcgtgccaatttcac
gaacggcttctcggaatttgatgaaaattagcagaaaatctgtagaagaacctgttccag
agccacaagcagtacatgttgaaccagttattgaaaaaccaacgaaaatttccgctaaaa
aagaaaaagagcagaaaaaatcggcggcgaaggaagcagcactgaaagaggcaaaggaaa
aggaaatgagaatatggaaattggctccgtttgaaacgcccaagaaagaagttcctttgt
actcgggtcgttggctcgtcatatccactggtcgcactctggctcagcaggagctttttt
cggatgcaaagtcgtttttcaaagcgaatcctccaccggctccacgggctccgcaggctc
cagaacttgcttcaggacctcgaagaatcccaacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATCTTGACACTCCGGCAAAAAT 551 395 671 Antisense
GATTGAAACTTCAAGCTCCCTTGCC 86 433 756 Antisense
ACATACACAAATTCCACAGGCCCTC 638 103 781 Antisense
GCGTGCCAATTTCACGAACGGCTTC 538 291 836 Antisense
AAGAACCTGTTCCAGAGCCACAAGC 288 153 896 Antisense
ATCGGCGGCGAAGGAAGCAGCACTG 498 33 990 Antisense
ATTGGCTCCGTTTGAAACGCCCAAG 547 3 1050 Antisense
GCTCAGCAGGAGCTTTTTTCGGATG 518 301 1132 Antisense
GTCGTTTTTCAAAGCGAATCCTCCA 309 471 1161 Antisense
GGCTCCAGAACTTGCTTCAGGACCT 249 539 1206 Antisense
TCAGGACCTCGAAGAATCCCAACTA 255 623 1222 Antisense
Sequence Source Affymetrix Proprietary Database