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[177168_at]

Description Y45G5AM.E /REP_DB=WormBase Gene ID /WP=CE26402 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23362.1
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 79      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 82      6grp_total > 59      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 563.2
(-1.3)
P
547.5
(-1.8)
P
500.7
(-3)
P
727.3
(3)
P
227
B 539.4
(-1.6)
P
469.3
(-3)
P
509.1
(-2.2)
P
763.3
(3)
P
294
C 488.1
(-3)
P
504.4
(-2.7)
P
547.8
(-1.8)
P
796.9
(3)
P
309
avr 530.2
(-2.5)
507.1
(-3)
519.2
(-2.7)
762.5
(3)
255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 425.3
(1.1)
P
371.3
(-1)
P
319
(-3)
P
384.9
(-0.4)
P
368.7
(-1.1)
P
474
(3)
P
155
B 447.3
(1.2)
P
348.7
(-1.8)
P
379.4
(-0.8)
P
308.7
(-3)
P
457.1
(1.5)
P
504.6
(3)
P
196
C 542
(2.5)
P
261.5
(-3)
P
417.4
(0)
P
283.7
(-2.6)
P
435.8
(0.4)
P
568.2
(3)
P
307
avr 471.5
(1.6)
327.2
(-3)
371.9
(-1.5)
325.8
(-3)
420.5
(-0)
515.6
(3)
190
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 205.1
(3)
P
118.9
(-2.2)
P
130.9
(-1.5)
P
106.5
(-3)
P
99
B 172
(3)
P
115.9
(-3)
P
118
(-2.8)
P
162.7
(2)
P
56
C 161.6
(-0.1)
P
145
(-1.9)
P
190.9
(3)
P
134.4
(-3)
P
57
avr 179.6
(3)
126.6
(-3)
146.6
(-0.7)
134.5
(-2.1)
53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 78.4
(-2.1)
P
132.1
(3)
P
69.5
(-3)
P
97.6
(-0.3)
P
111.3
(1)
P
115.4
(1.4)
P
63
B 155.6
(1.2)
P
116.1
(-1.1)
P
92.1
(-2.4)
P
81.8
(-3)
P
185.7
(2.9)
P
188.2
(3)
P
106
C 200.9
(3)
P
79.8
(-2.1)
P
106.2
(-1)
P
57.1
(-3)
P
141
(0.5)
P
190.2
(2.6)
P
144
avr 145
(1.6)
109.3
(-0.9)
89.3
(-2.3)
78.8
(-3)
146
(1.7)
164.6
(3)
86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177168_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19497
Sequence Type Exemplar sequence
Representative Public ID Y45G5AM.E NCBI
Target Description Y45G5AM.E /REP_DB=WormBase Gene ID /WP=CE26402 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23362.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171924(10), NM_171445(10)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_171924 NCBI Caenorhabditis elegans Y45G5AL.1a (Y45G5AL.1) mRNA, complete cds. 10/11 None
NM_171445 NCBI Caenorhabditis elegans Y45G5AL.1b (Y45G5AL.1) mRNA, complete cds. 10/11 None
SNAP00000024437 ENSEMBL cdna:SNAP chromosome:CEL140:V:4145652:4147078:1 10/11 None
GENEFINDER00000024462 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4145694:4147078:1 9/11 None
Y45G5AL.1a.2 ENSEMBL cdna:known chromosome:CEL140:V:4144317:4147315:1 gene:Y45G5AL.1 10/11 None
Y45G5AL.1a.1 ENSEMBL cdna:known chromosome:CEL140:V:4144319:4147372:1 gene:Y45G5AL.1 10/11 None
Y45G5AL.1b ENSEMBL cdna:known chromosome:CEL140:V:4144320:4147078:1 gene:Y45G5AL.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4145335-4147309(+) 83.12 100.0
Public Domain and Genome References
Ensembl Y45G5AL.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741521 Y45G5AL.1b [Caenorhabditis elegans] gb|AAL32246.1| Hypothetical protein Y45G5AL.1b [Caenorhabditis elegans] 1.0E-156
blast NP_741522 Y45G5AL.1a [Caenorhabditis elegans] gb|AAL32245.1| Hypothetical protein Y45G5AL.1a [Caenorhabditis elegans] 1.0E-155
blast NP_741521 Y45G5AL.1b [Caenorhabditis elegans] gb|AAL32246.1| Hypothetical protein Y45G5AL.1b [Caenorhabditis elegans] 1.0E-153
blast NP_741522 Y45G5AL.1a [Caenorhabditis elegans] gb|AAL32245.1| Hypothetical protein Y45G5AL.1a [Caenorhabditis elegans] 1.0E-153
Sequence
Target Sequence
>C. ELEGANS:177168_AT
aaacttcggactgttgcgacacggaaaaagcatcatcgctgttggacaaaccgacgttga
tggtgttatcatgccggatacacaataccgcgagaaggcatatcgggcgaaagttcaaaa
gatggcgtgtgctccaccgtcggttattcattacactacaatttatgatttcgagtttga
gccgacacagacgccgatccaagttcccatcagatatgacgagatatctgcaacaataga
gccgtcgccaatcgagcggatgccattctcggctccggatttcaatcagttgaagcttgc
aagaactatgggcgccaagaatccacaattccttgtcgagcatccagatctgaagtctgc
tggaagatctcagggaatcaccagttccatgaaggcgaaggtaactcaagtcctcgacga
agttcaccaaggt


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
AAACTTCGGACTGTTGCGACACGGA 414 125 120 Antisense
GCATCATCGCTGTTGGACAAACCGA 89 309 149 Antisense
TCCACCGTCGGTTATTCATTACACT 321 589 252 Antisense
TCGAGTTTGAGCCGACACAGACGCC 443 603 290 Antisense
AACAATAGAGCCGTCGCCAATCGAG 154 135 351 Antisense
AATCGAGCGGATGCCATTCTCGGCT 315 169 369 Antisense
CATTCTCGGCTCCGGATTTCAATCA 312 217 383 Antisense
AAGCTTGCAAGAACTATGGGCGCCA 476 149 412 Antisense
ATCCACAATTCCTTGTCGAGCATCC 172 41 440 Antisense
GGCGAAGGTAACTCAAGTCCTCGAC 546 537 513 Antisense
AGTCCTCGACGAAGTTCACCAAGGT 529 57 528 Antisense
Sequence Source Affymetrix Proprietary Database